Rroxscaffold_2G00137290

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019385
Physical Location & Seq
Reverse (-)
75038041 .. 75039521
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137290.1

Sequence Viewer

Length: 348 bp
ATGGGGACATATCCACAGGCTAATATTGCAGCATTAGAAAATAAACATTTGCTGGACTTTTTAGGTAATTGTTTACAAGGATCTTCTGCTGAATCTGCAGAGTTTGAGAACTATGGCCAGAGGCGCCCCTCGATTCCCTATGTGACAGAGCTTGATTATTTTGGTATTCGGTTTAAGCTTGGAGGCAGTAATGACGTGTGCAATGGAACATTCAGGAATGGATTTCTGACGATTCCACCATTATCAGTTCAAGAGAATGGAGAATCTCTCTTAGAAACCTCAGAGCCTGTGCACAGTTGGAACCAAATGGTGAAGATTCGCTGGGAGTTTGCATGGAAGAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

5.31

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 11 - 91 3.2e-09 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019385)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0106301
rosa_laevigata RLG00000017487
rosa_roxburghii Rroxscaffold_2G00137290
rosa_rugosa Rorug02G0134600
rosa_samantha Rh2AG185600 Rh2BG195800 Rh2CG190600 Rh2DG191700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 1 cut(s) 251
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 2 cut(s) 151, 178
AluI AGCT 2 cut(s) 151, 178
Alw21I GWGCWC 1 cut(s) 294
Alw44I GTGCAC 1 cut(s) 290
AlwI GGATC 1 cut(s) 88
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 1 cut(s) 115
ApaLI GTGCAC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 117
BanI GGYRCC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 125, 302
BplI GAGNNNNNCTC 2 cut(s) 252, 284
BsaHI GRCGYC 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 1 cut(s) 41
BseYI CCCAGC 1 cut(s) 321
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 294
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 80
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 125, 302
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 208
BssMI GATC 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 271, 280
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 3 cut(s) 26, 95, 123
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 287
CfoI GCGC 1 cut(s) 126
CviAII CATG 1 cut(s) 333
CviJI RGCY 5 cut(s) 20, 117, 151, 178, 286
CviKI_1 RGCY 5 cut(s) 20, 117, 151, 178, 286
DdeI CTNAG 2 cut(s) 271, 280
DinI GGCGCC 1 cut(s) 125
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 115
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
FaeI CATG 1 cut(s) 336
FaiI YATR 4 cut(s) 10, 114, 141, 334
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 332
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 30
GsaI CCCAGC 1 cut(s) 325
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 1 cut(s) 117
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 1 cut(s) 336
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 5 cut(s) 92, 133, 232, 263, 316
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 2 cut(s) 74, 292
Hpy188I TCNGA 2 cut(s) 228, 283
Hpy188III TCNNGA 2 cut(s) 214, 251
Hpy8I GTNNAC 2 cut(s) 74, 292
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 5 cut(s) 29, 98, 201, 292, 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 95, 123
HpyF3I CTNAG 2 cut(s) 271, 280
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 1 cut(s) 336
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 6 cut(s) 2, 38, 131, 199, 300, 307
Lsp1109I GCAGC 1 cut(s) 41
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 2 cut(s) 75, 325
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 1 cut(s) 67
MluNI TGGCCA 1 cut(s) 117
Mly113I GGCGCC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 4 cut(s) 114, 139, 176, 289
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 26, 95, 123
NarI GGCGCC 1 cut(s) 124
NdeII GATC 1 cut(s) 80
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 2 cut(s) 125, 302
NmuCI GTSAC 1 cut(s) 142
PfeI GAWTC 5 cut(s) 92, 133, 232, 263, 316
PkrI GCNGC 1 cut(s) 31
PluTI GGCGCC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 125, 302
PstI CTGCAG 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 80
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 294
SetI ASST 5 cut(s) 67, 153, 180, 198, 281
SfcI CTRYAG 1 cut(s) 96
SfoI GGCGCC 1 cut(s) 125
Sse9I AATT 1 cut(s) 67
SspDI GGCGCC 1 cut(s) 123
SspI AATATT 1 cut(s) 25
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 131
TasI AATT 1 cut(s) 67
TfiI GAWTC 5 cut(s) 92, 133, 232, 263, 316
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 142
VneI GTGCAC 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.