RLG00000018219

Taurine catabolism dioxygenase TauD, TfdA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017780
Physical Location & Seq
Forward (+)
27046451 .. 27049504
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018219

Sequence Viewer

Length: 981 bp
ATGGGGCACAGATTTGTGGAAGGAAAGATAAAGGGAGAGAAGGAATTTGGGGGCAAGGTGTTTCCAAAGACACTGAAACCTCCTCCGGAGATGAGCATTGACGGCGTGGATGAGTTGGTGGATATGGTGAAGGAAGAGAGAGAATTGCTGCACAAGACTCTTGAAGCTCACTCTGCCATTCTATTCAAGGGTTTTGGATTGAAGAGCGCAGAGGAGTTTGGGCAAGTGGTGGAAGCGTTTGGATGGGAAAACATGACTCACTTGTCGGCGGCTCCATGGCCGGTTCTGAGGCACTCGGTGGGAGAGAGAGTTTATGCTCCAAATGAGACTCACAGGCCTGTTGCTCAACCCATTGCCTTTCATCACGAGATGGCTTTGGTTAAGGAAGTTCCTTCAAAGTTATTTTTGTATTGTTTGCAGCCATCCCCCGAGGGGGGAGAGACATCTATACTGCCTAGCCAGGTGTTGGTTGATCAAATGGAAGAGAGAGAGCCTGAATTCGTGTCTAAAATTTCAACAACAGGTTTTGTCCACATAGCCAATTTGGCCACGGAATATGATCCTAAGGATGCTGGTGGTATCAATGAGCCATGGAAATGGATCCTAGACATTCAAGTTCTTGCTGAAGCTGAGAAGAGAGCAAAAGAAAAGCTTCTGTGCAGTGAGGTGAAATTTAAAGAAGATCGAGTTGGAGAGATTGTATTTGGGCCAATGAATCCAATTAGGAGCTATGGTGGAAAGAGGGTTTGGTTCAACACCATTCTTTGCTACGGTCCTAAAGGTTCCGACAGCACAAGCTTCACAGATGGTACCAAATTTCCAGAGTCAGCAGTGGAAACCTATAAGAAAATCTTAAAAGAGAACTGTGTGAACATTAAATGGGAGAAAGGAGATTTTCTGCTAGTAGATAATTTGCTGGCTCAACATGCTAAGCTTCCTGGAAAGCCACCGCGTCAAATTCTGGTTTCCATTTGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

327

Amino Acids

36.63

Weight (kDa)

6.11

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 41 - 316 3e-23 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017780)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0115841
rosa_laevigata RLG00000018216 RLG00000018219
rosa_multiflora Rmu_ssc0000197.1_g000027
rosa_roxburghii Rroxscaffold_2G00128600
rosa_rugosa Rorug02G0200100 Rorug02G0200400
rosa_samantha Rh2AG257100 Rh2BG268000 Rh2CG263500 Rh2DG265500
rosa_wichuraiana Rw2G020170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 262
Acc65I GGTACC 1 cut(s) 809
AccB1I GGYRCC 1 cut(s) 809
AccB7I CCANNNNNTGG 1 cut(s) 466
AccII CGCG 1 cut(s) 952
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 2 cut(s) 269, 950
AclWI GGATC 3 cut(s) 554, 595, 608
AcoI YGGCCR 2 cut(s) 278, 546
AcsI RAATTY 6 cut(s) 44, 497, 510, 671, 815, 957
AcuI CTGAAG 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 4 cut(s) 432, 433, 434, 466
AgsI TTSAA 7 cut(s) 164, 187, 202, 396, 516, 614, 754
AjnI CCWGG 2 cut(s) 459, 937
AjuI GAANNNNNNNTTGG 4 cut(s) 672, 704, 730, 762
AluBI AGCT 6 cut(s) 167, 629, 652, 729, 798, 934
AluI AGCT 6 cut(s) 167, 629, 652, 729, 798, 934
Alw26I GTCTC 2 cut(s) 320, 434
AlwI GGATC 3 cut(s) 554, 595, 608
Ama87I CYCGRG 1 cut(s) 428
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 4 cut(s) 278, 335, 546, 707
ApeKI GCWGC 2 cut(s) 148, 418
ApoI RAATTY 6 cut(s) 44, 497, 510, 671, 815, 957
Asp700I GAANNNNTTC 1 cut(s) 651
Asp718I GGTACC 1 cut(s) 809
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 707, 773
AsuHPI GGTGA 2 cut(s) 139, 679
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 1 cut(s) 773
AxyI CCTNAGG 1 cut(s) 564
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 548
BamHI GGATCC 1 cut(s) 600
BanI GGYRCC 1 cut(s) 809
BauI CACGAG 1 cut(s) 365
BbvI GCAGC 2 cut(s) 135, 430
BccI CCATC 4 cut(s) 237, 364, 430, 800
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 2 cut(s) 461, 939
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 320, 434
BfaI CTAG 3 cut(s) 456, 605, 902
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 3 cut(s) 149, 270, 419
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 3 cut(s) 150, 271, 420
Bme1390I CCNGG 2 cut(s) 461, 939
Bme18I GGWCC 1 cut(s) 773
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 707, 773
BmiI GGNNCC 4 cut(s) 273, 602, 784, 811
BmrFI CCNGG 2 cut(s) 461, 939
BmsI GCATC 1 cut(s) 559
Bpu1102I GCTNAGC 1 cut(s) 930
BsaJI CCNNGG 4 cut(s) 275, 429, 549, 590
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 6 cut(s) 294, 324, 684, 714, 718, 748
Bsc4I CCNNNNNNNGG 4 cut(s) 432, 433, 434, 466
Bse118I RCCGGY 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 564
Bse3DI GCAATG 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 2 cut(s) 461, 939
BseDI CCNNGG 4 cut(s) 275, 429, 549, 590
BseGI GGATG 4 cut(s) 115, 248, 422, 574
BseLI CCNNNNNNNGG 4 cut(s) 432, 433, 434, 466
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 278, 621
BseRI GAGGAG 2 cut(s) 72, 227
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 135, 430
BsgI GTGCAG 2 cut(s) 134, 679
Bsh1236I CGCG 1 cut(s) 952
BshFI GGCC 4 cut(s) 280, 337, 548, 709
BshNI GGYRCC 1 cut(s) 809
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 86, 281
BslI CCNNNNNNNGG 4 cut(s) 432, 433, 434, 466
BsmAI GTCTC 2 cut(s) 320, 434
BsnI GGCC 4 cut(s) 280, 337, 548, 709
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 4 cut(s) 472, 559, 600, 682
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp19I CCATGG 2 cut(s) 275, 590
BspACI CCGC 2 cut(s) 269, 950
BspANI GGCC 4 cut(s) 280, 337, 548, 709
BspCNI CTCAG 2 cut(s) 279, 622
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 1 cut(s) 952
BspLI GGNNCC 4 cut(s) 273, 602, 784, 811
BspPI GGATC 3 cut(s) 554, 595, 608
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 809
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 4 cut(s) 275, 429, 549, 590
BssMI GATC 4 cut(s) 472, 559, 600, 682
BssSI CACGAG 1 cut(s) 365
BssT1I CCWWGG 2 cut(s) 275, 590
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 2 cut(s) 461, 939
Bst4CI ACNGT 2 cut(s) 773, 866
Bst6I CTCTTC 4 cut(s) 129, 197, 477, 629
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 4 cut(s) 287, 564, 630, 930
BstDSI CCRYGG 3 cut(s) 275, 549, 590
BstF5I GGATG 4 cut(s) 115, 248, 422, 574
BstFNI CGCG 1 cut(s) 952
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 4 cut(s) 475, 562, 603, 685
BstMAI GTCTC 2 cut(s) 320, 434
BstMBI GATC 4 cut(s) 472, 559, 600, 682
BstMWI GCNNNNNNNGC 4 cut(s) 102, 173, 545, 926
BstNI CCWGG 2 cut(s) 461, 939
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 2 cut(s) 459, 937
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 952
BstV1I GCAGC 2 cut(s) 135, 430
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 597
BstYI RGATCY 1 cut(s) 600
Bsu36I CCTNAGG 1 cut(s) 564
BsuRI GGCC 4 cut(s) 280, 337, 548, 709
BtgI CCRYGG 3 cut(s) 275, 549, 590
BtsCI GGATG 4 cut(s) 115, 248, 422, 574
BtsI GCAGTG 2 cut(s) 667, 837
BtsIMutI CAGTG 3 cut(s) 71, 667, 837
Cac8I GCNNGC 1 cut(s) 918
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 707, 773
CseI GACGC 1 cut(s) 941
Csp6I GTAC 1 cut(s) 810
CviAII CATG 4 cut(s) 253, 276, 591, 926
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 4 cut(s) 287, 564, 630, 930
DpnI GATC 4 cut(s) 474, 561, 602, 684
DpnII GATC 4 cut(s) 472, 559, 600, 682
DraI TTTAAA 1 cut(s) 676
DraIII CACNNNGTG 1 cut(s) 298
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 2 cut(s) 278, 546
Eam1104I CTCTTC 4 cut(s) 129, 197, 477, 629
EarI CTCTTC 4 cut(s) 129, 197, 477, 629
Eco130I CCWWGG 2 cut(s) 275, 590
Eco147I AGGCCT 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 773
Eco57I CTGAAG 1 cut(s) 645
Eco81I CCTNAGG 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 459, 937
EcoT14I CCWWGG 2 cut(s) 275, 590
ErhI CCWWGG 2 cut(s) 275, 590
FaeI CATG 4 cut(s) 256, 279, 594, 929
FalI AAGNNNNNCTT 4 cut(s) 636, 668, 836, 868
FatI CATG 4 cut(s) 252, 275, 590, 925
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 149, 270, 419
FokI GGATG 4 cut(s) 122, 255, 409, 581
Fsp4HI GCNGC 3 cut(s) 149, 270, 419
FspBI CTAG 3 cut(s) 456, 605, 902
GlaI GCGC 1 cut(s) 208
GluI GCNGC 3 cut(s) 149, 270, 419
HaeIII GGCC 4 cut(s) 280, 337, 548, 709
HapII CCGG 2 cut(s) 86, 281
HgaI GACGC 1 cut(s) 941
HhaI GCGC 1 cut(s) 209
Hin1II CATG 4 cut(s) 256, 279, 594, 929
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 3 cut(s) 650, 796, 932
HinfI GANTC 5 cut(s) 157, 256, 328, 715, 824
HpaII CCGG 2 cut(s) 86, 281
HphI GGTGA 2 cut(s) 139, 679
Hpy166II GTNNAC 2 cut(s) 532, 871
Hpy188I TCNGA 2 cut(s) 288, 787
Hpy188III TCNNGA 4 cut(s) 86, 161, 365, 821
Hpy8I GTNNAC 2 cut(s) 532, 871
HpyAV CCTTC 4 cut(s) 14, 34, 124, 402
HpyCH4III ACNGT 2 cut(s) 773, 866
HpyCH4V TGCA 3 cut(s) 151, 418, 660
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 173, 545, 926
HpyF3I CTNAG 4 cut(s) 287, 564, 630, 930
Hsp92II CATG 4 cut(s) 256, 279, 594, 929
HspAI GCGC 1 cut(s) 207
Kpn2I TCCGGA 1 cut(s) 85
KpnI GGTACC 1 cut(s) 813
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 4 cut(s) 472, 559, 600, 682
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 3 cut(s) 277, 322, 726
Lsp1109I GCAGC 2 cut(s) 135, 430
LweI GCATC 1 cut(s) 559
MaeI CTAG 3 cut(s) 456, 605, 902
MalI GATC 4 cut(s) 474, 561, 602, 684
MboI GATC 4 cut(s) 472, 559, 600, 682
MboII GAAGA 5 cut(s) 146, 214, 494, 646, 692
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 548
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 4 cut(s) 151, 250, 322, 833
MmeI TCCRAC 2 cut(s) 670, 810
MnlI CCTC 7 cut(s) 90, 93, 205, 282, 424, 658, 735
Mox20I TGGCCA 1 cut(s) 548
MroI TCCGGA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 651
MscI TGGCCA 1 cut(s) 548
MseI TTAA 4 cut(s) 381, 675, 854, 876
MslI CAYNNNNRTG 1 cut(s) 595
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 2 cut(s) 86, 281
MspR9I CCNGG 2 cut(s) 461, 939
MvaI CCWGG 2 cut(s) 461, 939
MvnI CGCG 1 cut(s) 952
MwoI GCNNNNNNNGC 4 cut(s) 102, 173, 545, 926
NcoI CCATGG 2 cut(s) 275, 590
NdeII GATC 4 cut(s) 472, 559, 600, 682
NlaIII CATG 4 cut(s) 256, 279, 594, 929
NlaIV GGNNCC 4 cut(s) 273, 602, 784, 811
NspI RCATGY 1 cut(s) 929
PceI AGGCCT 1 cut(s) 337
PciSI GCTCTTC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 715
PflMI CCANNNNNTGG 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 937
PkrI GCNGC 3 cut(s) 150, 271, 420
PleI GAGTC 4 cut(s) 151, 250, 322, 832
PpsI GAGTC 4 cut(s) 151, 250, 322, 832
Psp6I CCWGG 2 cut(s) 459, 937
PspGI CCWGG 2 cut(s) 459, 937
PspN4I GGNNCC 4 cut(s) 273, 602, 784, 811
PspPI GGNCC 2 cut(s) 707, 773
PsuI RGATCY 1 cut(s) 600
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
RseI CAYNNNNRTG 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 381, 675, 854, 876
SatI GCNGC 3 cut(s) 149, 270, 419
Sau3AI GATC 4 cut(s) 472, 559, 600, 682
Sau96I GGNCC 2 cut(s) 707, 773
SchI GAGTC 4 cut(s) 151, 250, 322, 833
ScrFI CCNGG 2 cut(s) 461, 939
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 1 cut(s) 559
SinI GGWCC 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 595
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 2 cut(s) 269, 950
SspMI CTAG 3 cut(s) 456, 605, 902
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 2 cut(s) 459, 937
StyI CCWWGG 2 cut(s) 275, 590
TaaI ACNGT 2 cut(s) 773, 866
TaqI TCGA 1 cut(s) 685
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 715
Tru1I TTAA 4 cut(s) 381, 675, 854, 876
Tru9I TTAA 4 cut(s) 381, 675, 854, 876
TscAI CASTG 3 cut(s) 78, 667, 837
TseI GCWGC 2 cut(s) 148, 418
TspDTI ATGAA 2 cut(s) 350, 728
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 3 cut(s) 78, 667, 837
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 773
XapI RAATTY 6 cut(s) 44, 497, 510, 671, 815, 957
XceI RCATGY 1 cut(s) 929
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 3 cut(s) 456, 605, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.