Rw2G020170

Taurine catabolism dioxygenase TauD, TfdA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017780
Physical Location & Seq
Forward (+)
27360342 .. 27362483
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020170.1

Sequence Viewer

Length: 975 bp
ATGGGGCACAGATTTGTGGAAGGAAAGATAGAGGGAGAGAAGGAGTTTGGAGGCAAGGTGTTTCCCAAGACACTGAAACCTCCTCCGGAGATGAGCACTGACGGCGTAGATGAGCTGGCGGAGATGGTGAAGGAAGAGAGAGATTGGCTGCACAAGACTCTCGAGGCTCACTCTGCCATTCTGTTCAAGGGTTTCGGATTGAAGAGCGGGGACGAGTTCGGGCGTGTGGTCGAGGCGTTTGGATGGGAAAACATGACTTACTCGGCACCGGCCCCGCGGCCGATTCTGAGGCATTTGGTGGGAGGGAGAGTTTATACTTCAAATGCGACTCCTGTTACTCAACTAATCACCTTCCATCACGAAATGGCTTGGGTGAAGGAAGTCCCTTCAAAGATATTTTTGTATTGTTTGCAGCCATCCCCGGAGGGTGGAGAAACGTCTATATTGCCCAGTCAGGTTGTGGTTGATCAAATGGAAGAGAGAGTTCCTGAATTCGTCTCTAAAATTTCAACAATAGGTTTTGTCCACAGAGTAAGTTTGGCCACGGAATGTGATTCTGAGGATGCTGATGGTATCAATGAGCCATGGAAATGGATCCTAGACACTCGAGATCTTGCAGAAGCTGAGAAGAGAGCAAAAGAAAAGTTTCTATGCCGTGAGGTGAAATTTAGAGAAGAAGGACTGTTAGAGCTTCTCTTTGGACCGGTATGTCCAATAAGGAGCTATGGGGGAAAGAGGGTATGGTTCAACACTATTCTTTGCTACGCTCCTAAAGATTCTGACAGCATAAGCTTCACGGATGGTACCAAACTTCCAGAGTCGGCAGTGGAAACCTACAAGAAAATCTTAGAGGATAACTGTGTGAACATCAAATGGGAGAAAGGAGACTTTCTGCTACTAGATAATTTGCTGGCTCAACATGCTAGGCTTCCTGGAAAGCCGCCACGTCAAATTCTGGTTTCCATTTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

324

Amino Acids

36.63

Weight (kDa)

5.63

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 38 - 316 1.2e-25 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017780)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0115841
rosa_laevigata RLG00000018216 RLG00000018219
rosa_multiflora Rmu_ssc0000197.1_g000027
rosa_roxburghii Rroxscaffold_2G00128600
rosa_rugosa Rorug02G0200100 Rorug02G0200400
rosa_samantha Rh2AG257100 Rh2BG268000 Rh2CG263500 Rh2DG265500
rosa_wichuraiana Rw2G020170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 708
Acc65I GGTACC 1 cut(s) 803
AccB1I GGYRCC 2 cut(s) 265, 803
AccBSI CCGCTC 1 cut(s) 207
AccII CGCG 1 cut(s) 277
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 5 cut(s) 119, 207, 275, 277, 941
AclWI GGATC 2 cut(s) 589, 602
AcoI YGGCCR 2 cut(s) 278, 540
AcsI RAATTY 4 cut(s) 491, 504, 665, 951
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 1 cut(s) 428
AgeI ACCGGT 1 cut(s) 703
AgsI TTSAA 6 cut(s) 187, 202, 321, 390, 510, 748
AjiI CACGTC 1 cut(s) 947
AjnI CCWGG 1 cut(s) 931
AluBI AGCT 5 cut(s) 115, 623, 691, 723, 792
AluI AGCT 5 cut(s) 115, 623, 691, 723, 792
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 2 cut(s) 502, 879
AlwI GGATC 2 cut(s) 589, 602
AlwNI CAGNNNCTG 1 cut(s) 623
Ama87I CYCGRG 2 cut(s) 161, 606
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 3 cut(s) 270, 278, 540
ApeKI GCWGC 2 cut(s) 148, 412
ApoI RAATTY 4 cut(s) 491, 504, 665, 951
AsiGI ACCGGT 1 cut(s) 703
Asp700I GAANNNNTTC 1 cut(s) 645
Asp718I GGTACC 1 cut(s) 803
AspS9I GGNCC 2 cut(s) 271, 701
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 4 cut(s) 139, 340, 385, 673
AvaI CYCGRG 2 cut(s) 161, 606
AvaII GGWCC 1 cut(s) 701
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 1 cut(s) 594
BanI GGYRCC 2 cut(s) 265, 803
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 135, 424
BccI CCATC 6 cut(s) 118, 237, 363, 424, 563, 794
BceAI ACGGC 2 cut(s) 118, 639
BciT130I CCWGG 1 cut(s) 933
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 502, 879
BfaI CTAG 3 cut(s) 599, 899, 924
BglII AGATCT 1 cut(s) 610
BisI GCNGC 4 cut(s) 149, 278, 413, 941
BlsI GCNGC 4 cut(s) 150, 279, 414, 942
Bme1390I CCNGG 2 cut(s) 422, 933
Bme18I GGWCC 1 cut(s) 701
BmeT110I CYCGRG 2 cut(s) 161, 606
BmgBI CACGTC 1 cut(s) 947
BmgT120I GGNCC 2 cut(s) 271, 701
BmiI GGNNCC 4 cut(s) 267, 273, 596, 805
BmrFI CCNGG 2 cut(s) 422, 933
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpuMI CCSGG 1 cut(s) 422
BsaJI CCNNGG 4 cut(s) 275, 420, 543, 584
BsaWI WCCGGW 2 cut(s) 85, 703
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse118I RCCGGY 2 cut(s) 268, 703
Bse1I ACTGG 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 1 cut(s) 933
BseDI CCNNGG 4 cut(s) 275, 420, 543, 584
BseGI GGATG 4 cut(s) 248, 416, 568, 805
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 3 cut(s) 278, 549, 615
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 9
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 135, 424
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 277
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 3 cut(s) 272, 280, 542
BshNI GGYRCC 2 cut(s) 265, 803
BshTI ACCGGT 1 cut(s) 703
BsiEI CGRYCG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 2 cut(s) 161, 606
BsiSI CCGG 4 cut(s) 86, 269, 422, 704
BslFI GGGAC 2 cut(s) 224, 368
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 502, 879
BsmBI CGTCTC 1 cut(s) 502
BsmFI GGGAC 2 cut(s) 224, 368
BsnI GGCC 3 cut(s) 272, 280, 542
BsoBI CYCGRG 2 cut(s) 161, 606
Bsp1286I GDGCHC 2 cut(s) 9, 98
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 3 cut(s) 466, 594, 610
Bsp19I CCATGG 1 cut(s) 584
BspACI CCGC 5 cut(s) 119, 207, 275, 277, 941
BspANI GGCC 3 cut(s) 272, 280, 542
BspCNI CTCAG 3 cut(s) 279, 550, 616
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 267, 273, 596, 805
BspPI GGATC 2 cut(s) 589, 602
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 2 cut(s) 265, 803
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 268, 703
BsrI ACTGG 1 cut(s) 450
BssAI RCCGGY 2 cut(s) 268, 703
BssECI CCNNGG 4 cut(s) 275, 420, 543, 584
BssMI GATC 3 cut(s) 466, 594, 610
BssT1I CCWWGG 1 cut(s) 584
Bst2UI CCWGG 1 cut(s) 933
Bst4CI ACNGT 2 cut(s) 684, 860
Bst6I CTCTTC 4 cut(s) 129, 197, 471, 623
BstC8I GCNNGC 2 cut(s) 117, 912
BstDEI CTNAG 4 cut(s) 287, 558, 624, 847
BstDSI CCRYGG 3 cut(s) 275, 543, 584
BstF5I GGATG 4 cut(s) 248, 416, 568, 805
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 3 cut(s) 469, 597, 613
BstMAI GTCTC 2 cut(s) 502, 879
BstMBI GATC 3 cut(s) 466, 594, 610
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 3 cut(s) 102, 173, 920
BstNI CCWGG 1 cut(s) 933
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 2 cut(s) 420, 931
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 135, 424
BstX2I RGATCY 2 cut(s) 594, 610
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 2 cut(s) 594, 610
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 3 cut(s) 272, 280, 542
BtgI CCRYGG 3 cut(s) 275, 543, 584
BtrI CACGTC 1 cut(s) 947
BtsCI GGATG 4 cut(s) 248, 416, 568, 805
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 3 cut(s) 71, 96, 831
Cac8I GCNNGC 2 cut(s) 117, 912
CaiI CAGNNNCTG 1 cut(s) 623
Cfr10I RCCGGY 2 cut(s) 268, 703
Cfr13I GGNCC 2 cut(s) 271, 701
Cfr42I CCGCGG 1 cut(s) 278
Csp6I GTAC 1 cut(s) 804
CspAI ACCGGT 1 cut(s) 703
CviAII CATG 3 cut(s) 253, 585, 920
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 4 cut(s) 287, 558, 624, 847
DpnI GATC 3 cut(s) 468, 596, 612
DpnII GATC 3 cut(s) 466, 594, 610
DrdI GACNNNNNNGTC 1 cut(s) 708
DseDI GACNNNNNNGTC 1 cut(s) 708
EaeI YGGCCR 2 cut(s) 278, 540
EagI CGGCCG 1 cut(s) 278
Eam1104I CTCTTC 4 cut(s) 129, 197, 471, 623
EarI CTCTTC 4 cut(s) 129, 197, 471, 623
EciI GGCGGA 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 701
Eco52I CGGCCG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 161, 606
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 931
EcoT14I CCWWGG 1 cut(s) 584
ErhI CCWWGG 1 cut(s) 584
Esp3I CGTCTC 1 cut(s) 502
FaeI CATG 3 cut(s) 256, 588, 923
FalI AAGNNNNNCTT 2 cut(s) 830, 862
FaqI GGGAC 2 cut(s) 224, 368
FatI CATG 3 cut(s) 252, 584, 919
FauI CCCGC 2 cut(s) 200, 282
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 4 cut(s) 149, 278, 413, 941
FokI GGATG 4 cut(s) 255, 403, 575, 812
Fsp4HI GCNGC 4 cut(s) 149, 278, 413, 941
FspBI CTAG 3 cut(s) 599, 899, 924
GluI GCNGC 4 cut(s) 149, 278, 413, 941
HaeIII GGCC 3 cut(s) 272, 280, 542
HapII CCGG 4 cut(s) 86, 269, 422, 704
Hin1II CATG 3 cut(s) 256, 588, 923
HindIII AAGCTT 1 cut(s) 790
HinfI GANTC 6 cut(s) 157, 283, 328, 554, 776, 818
HpaII CCGG 4 cut(s) 86, 269, 422, 704
HphI GGTGA 4 cut(s) 139, 340, 385, 673
Hpy166II GTNNAC 2 cut(s) 526, 865
Hpy188I TCNGA 4 cut(s) 197, 288, 559, 781
Hpy188III TCNNGA 6 cut(s) 86, 161, 359, 488, 608, 815
Hpy8I GTNNAC 2 cut(s) 526, 865
HpyAV CCTTC 7 cut(s) 14, 34, 124, 361, 370, 396, 671
HpyCH4III ACNGT 2 cut(s) 684, 860
HpyCH4IV ACGT 2 cut(s) 437, 946
HpyCH4V TGCA 4 cut(s) 151, 412, 617, 969
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 173, 920
HpyF3I CTNAG 4 cut(s) 287, 558, 624, 847
HpySE526I ACGT 2 cut(s) 437, 946
Hsp92II CATG 3 cut(s) 256, 588, 923
Kpn2I TCCGGA 1 cut(s) 85
KpnI GGTACC 1 cut(s) 807
Ksp22I TGATCA 1 cut(s) 466
KspI CCGCGG 1 cut(s) 278
Kzo9I GATC 3 cut(s) 466, 594, 610
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 720, 772
Lsp1109I GCAGC 2 cut(s) 135, 424
LweI GCATC 1 cut(s) 553
MaeI CTAG 3 cut(s) 599, 899, 924
MaeII ACGT 2 cut(s) 437, 946
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 468, 596, 612
MbiI CCGCTC 1 cut(s) 207
MboI GATC 3 cut(s) 466, 594, 610
MboII GAAGA 5 cut(s) 146, 214, 488, 640, 686
MflI RGATCY 2 cut(s) 594, 610
MhlI GDGCHC 2 cut(s) 9, 98
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 5 cut(s) 491, 504, 665, 904, 951
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 3 cut(s) 151, 322, 827
Mox20I TGGCCA 1 cut(s) 542
MroI TCCGGA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 645
MscI TGGCCA 1 cut(s) 542
MslI CAYNNNNRTG 1 cut(s) 589
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 4 cut(s) 86, 269, 422, 704
MspR9I CCNGG 2 cut(s) 422, 933
MvaI CCWGG 1 cut(s) 933
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 102, 173, 920
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 1 cut(s) 584
NdeII GATC 3 cut(s) 466, 594, 610
NlaIII CATG 3 cut(s) 256, 588, 923
NlaIV GGNNCC 4 cut(s) 267, 273, 596, 805
NmeAIII GCCGAG 1 cut(s) 242
NspI RCATGY 1 cut(s) 923
PaeR7I CTCGAG 2 cut(s) 161, 606
PciSI GCTCTTC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 3 cut(s) 283, 554, 776
PfoI TCCNGGA 1 cut(s) 931
PinAI ACCGGT 1 cut(s) 703
PkrI GCNGC 4 cut(s) 150, 279, 414, 942
PleI GAGTC 3 cut(s) 151, 322, 826
PpsI GAGTC 3 cut(s) 151, 322, 826
Psp6I CCWGG 1 cut(s) 931
PspGI CCWGG 1 cut(s) 931
PspN4I GGNNCC 4 cut(s) 267, 273, 596, 805
PspPI GGNCC 2 cut(s) 271, 701
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 2 cut(s) 594, 610
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 1 cut(s) 589
SacII CCGCGG 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 4 cut(s) 149, 278, 413, 941
Sau3AI GATC 3 cut(s) 466, 594, 610
Sau96I GGNCC 2 cut(s) 271, 701
SchI GAGTC 3 cut(s) 151, 322, 827
ScrFI CCNGG 2 cut(s) 422, 933
SduI GDGCHC 2 cut(s) 9, 98
SfaNI GCATC 1 cut(s) 553
Sfr274I CTCGAG 2 cut(s) 161, 606
Sfr303I CCGCGG 1 cut(s) 278
SgrBI CCGCGG 1 cut(s) 278
SinI GGWCC 1 cut(s) 701
SlaI CTCGAG 2 cut(s) 161, 606
SmiMI CAYNNNNRTG 1 cut(s) 589
SmlI CTYRAG 2 cut(s) 161, 606
SmoI CTYRAG 2 cut(s) 161, 606
Sse9I AATT 5 cut(s) 491, 504, 665, 904, 951
SsiI CCGC 5 cut(s) 119, 207, 275, 277, 941
SspMI CTAG 3 cut(s) 599, 899, 924
StyD4I CCNGG 2 cut(s) 420, 931
StyI CCWWGG 1 cut(s) 584
TaaI ACNGT 2 cut(s) 684, 860
TaiI ACGT 2 cut(s) 440, 949
TaqI TCGA 3 cut(s) 162, 231, 607
TasI AATT 5 cut(s) 491, 504, 665, 904, 951
TauI GCSGC 2 cut(s) 280, 943
TfiI GAWTC 3 cut(s) 283, 554, 776
TscAI CASTG 3 cut(s) 78, 103, 831
TseI GCWGC 2 cut(s) 148, 412
TspGWI ACGGA 2 cut(s) 560, 812
TspRI CASTG 3 cut(s) 78, 103, 831
VpaK11BI GGWCC 1 cut(s) 701
XapI RAATTY 4 cut(s) 491, 504, 665, 951
XceI RCATGY 1 cut(s) 923
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XhoI CTCGAG 2 cut(s) 161, 606
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 3 cut(s) 599, 899, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.