Rorug02G0200100

Taurine catabolism dioxygenase TauD, TfdA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002695
Physical Location & Seq
Forward (+)
18678145 .. 18680353
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0200100.1

Sequence Viewer

Length: 600 bp
ATGACCTCCGCTTTGGATTTCAGCCCCAGCATCAGTGAGTCCCTCGGCGACGTTACCATTTTCACCGCTGCTGGAGACGCCGTCCAGTTCAAGGACCTCTGGGACCAGAACGAGGGGGTGGCTGTTGTTGCACTATTGAGGCACTTTGGATGCCCTTGCAGTTGGGAACTTGCTGCAACTCTAAAAGAATCAAAAGCGAAATTTGACTCAGCTGGTGTGAAACTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCTCGTGTCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTTTATGCTGATCCTGATCGTAAGGCGTATAATATTTTGGGTTTATACTATGGATGGGGTCCAACATTCTTCAATCCAGCCATTATTGTAAAGATGTTGTCAAGATTTGGTGCTCTAAGGAAAGCTGTAAAAAACTATACGATTAAAGCCACTCCAGATGATAGAAGTGGTGTGTTGCAACAGGGAGGGATGTTTGTCTTCAAAGGGAAGCAGTTATTGTATGCTCGGAAAGACAAAGAGACAAGTGATCATGCCCCATTAGACGATATTTTGGATGTTTGCTGCAAAGTTCCAGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

199

Amino Acids

21.71

Weight (kDa)

7.62

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 61 - 178 1.1e-19 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 66
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 91, 112
AgsI TTSAA 3 cut(s) 91, 370, 499
AluBI AGCT 3 cut(s) 212, 257, 422
AluI AGCT 3 cut(s) 212, 257, 422
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 2 cut(s) 69, 530
AlwI GGATC 1 cut(s) 302
ApeKI GCWGC 3 cut(s) 68, 173, 579
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 27, 576
AspS9I GGNCC 3 cut(s) 94, 103, 356
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 3 cut(s) 94, 103, 356
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 3 cut(s) 55, 160, 566
BccI CCATC 1 cut(s) 345
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 69, 530
BisI GCNGC 3 cut(s) 69, 174, 580
BlsI GCNGC 3 cut(s) 70, 175, 581
Bme18I GGWCC 3 cut(s) 94, 103, 356
BmgT120I GGNCC 3 cut(s) 94, 103, 356
BmiI GGNNCC 2 cut(s) 104, 357
BmsI GCATC 2 cut(s) 39, 140
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 2 cut(s) 93, 435
BsaBI GATNNNNATC 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 43, 288
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 112
Bse1I ACTGG 2 cut(s) 85, 590
Bse8I GATNNNNATC 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 43, 288
BseGI GGATG 4 cut(s) 155, 356, 492, 577
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 91, 112
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 85, 590
BseXI GCAGC 3 cut(s) 55, 160, 566
BseYI CCCAGC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 412
BslFI GGGAC 2 cut(s) 25, 116
BslI CCNNNNNNNGG 2 cut(s) 91, 112
BsmAI GTCTC 2 cut(s) 69, 530
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 25, 116
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 3 cut(s) 307, 313, 544
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 2 cut(s) 9, 66
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 104, 357
BspPI GGATC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 85, 590
BssECI CCNNGG 2 cut(s) 43, 288
BssMI GATC 3 cut(s) 307, 313, 544
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 208, 413
BstDSI CCRYGG 1 cut(s) 288
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 4 cut(s) 155, 356, 492, 577
BstKTI GATC 3 cut(s) 310, 316, 547
BstMAI GTCTC 2 cut(s) 69, 530
BstMBI GATC 3 cut(s) 307, 313, 544
BstMWI GCNNNNNNNGC 2 cut(s) 77, 128
BstPI GGTNACC 1 cut(s) 276
BstV1I GCAGC 3 cut(s) 55, 160, 566
BstV2I GAAGAC 1 cut(s) 487
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 4 cut(s) 155, 356, 492, 577
BtsIMutI CAGTG 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 94, 103, 356
CseI GACGC 1 cut(s) 86
CviAII CATG 2 cut(s) 289, 548
CviJI RGCY 7 cut(s) 24, 122, 212, 257, 377, 422, 446
CviKI_1 RGCY 7 cut(s) 24, 122, 212, 257, 377, 422, 446
DdeI CTNAG 2 cut(s) 208, 413
DpnI GATC 3 cut(s) 309, 315, 546
DpnII GATC 3 cut(s) 307, 313, 544
Eco130I CCWWGG 1 cut(s) 288
Eco47I GGWCC 3 cut(s) 94, 103, 356
Eco91I GGTNACC 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 2 cut(s) 292, 551
FaiI YATR 8 cut(s) 290, 303, 327, 343, 348, 435, 519, 549
FaqI GGGAC 2 cut(s) 25, 116
FatI CATG 2 cut(s) 288, 547
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 3 cut(s) 69, 174, 580
FokI GGATG 4 cut(s) 162, 363, 499, 584
Fsp4HI GCNGC 3 cut(s) 69, 174, 580
GluI GCNGC 3 cut(s) 69, 174, 580
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 2 cut(s) 93, 435
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 292, 551
HinfI GANTC 4 cut(s) 38, 188, 206, 293
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 5 cut(s) 248, 311, 399, 452, 597
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 6 cut(s) 131, 159, 176, 269, 475, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 128
HpyF3I CTNAG 2 cut(s) 208, 413
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 292, 551
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 307, 313, 544
Lsp1109I GCAGC 3 cut(s) 55, 160, 566
LweI GCATC 2 cut(s) 39, 140
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 52, 276
MalI GATC 3 cut(s) 309, 315, 546
MboI GATC 3 cut(s) 307, 313, 544
MboII GAAGA 2 cut(s) 358, 487
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 2 cut(s) 200, 225
MlyI GAGTC 2 cut(s) 47, 200
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 6 cut(s) 16, 53, 106, 107, 132, 476
MseI TTAA 1 cut(s) 441
MspA1I CMGCKG 2 cut(s) 68, 212
MwoI GCNNNNNNNGC 2 cut(s) 77, 128
NcoI CCATGG 1 cut(s) 288
NdeII GATC 3 cut(s) 307, 313, 544
NlaIII CATG 2 cut(s) 292, 551
NlaIV GGNNCC 2 cut(s) 104, 357
NmeAIII GCCGAG 1 cut(s) 24
PfeI GAWTC 2 cut(s) 188, 293
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 70, 175, 581
PleI GAGTC 2 cut(s) 46, 200
PpsI GAGTC 2 cut(s) 46, 200
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 104, 357
PspPI GGNCC 3 cut(s) 94, 103, 356
PspPPI RGGWCCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 3 cut(s) 69, 174, 580
Sau3AI GATC 3 cut(s) 307, 313, 544
Sau96I GGNCC 3 cut(s) 94, 103, 356
SchI GAGTC 2 cut(s) 47, 200
SduI GDGCHC 1 cut(s) 412
SetI ASST 6 cut(s) 8, 54, 99, 214, 259, 424
SfaNI GCATC 2 cut(s) 39, 140
SinI GGWCC 3 cut(s) 94, 103, 356
Sse9I AATT 2 cut(s) 200, 225
SsiI CCGC 2 cut(s) 9, 66
SspI AATATT 1 cut(s) 331
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 1 cut(s) 54
TasI AATT 2 cut(s) 200, 225
TfiI GAWTC 2 cut(s) 188, 293
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 40
TseI GCWGC 3 cut(s) 68, 173, 579
TspRI CASTG 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 3 cut(s) 94, 103, 356
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.