Rroxscaffold_5G00371280

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
52890472 .. 52894597
4126 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00371280.1

Sequence Viewer

Length: 294 bp
ATGTTGATCTGGTGCCTGATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGCAGCAGTTGAGTATTTGAAGCAGCTCCAACTTCAATTACAGAGGGGAGAAAGGAAGAAACAGAAGAAGGGGGAGACGAGAAGGACAGAAGAGGCAGGGAAATCCAAAAGACGAGAAGAACTGCTCTACTTCACAGATTCAAGGATATGTCTGCTGGAACAAGGAACAACATTAACAAGTTTTGGGCCAAAAGCCAAGATAGTGGCAGCATGCCAGCATCCATTCATTTTATGA

Protein Analysis

97

Amino Acids

11.14

Weight (kDa)

9.58

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 25
AgsI TTSAA 4 cut(s) 51, 79, 95, 201
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 62, 82, 266
ApoI RAATTY 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 245
BanI GGYRCC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 74, 94, 278
BcoDI GTCTC 1 cut(s) 128
BisI GCNGC 3 cut(s) 63, 83, 267
BlsI GCNGC 3 cut(s) 64, 84, 268
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 2 cut(s) 49, 286
BseGI GGATG 2 cut(s) 64, 277
BseXI GCAGC 3 cut(s) 74, 94, 278
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 12
BssMI GATC 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 271, 275
BstF5I GGATG 2 cut(s) 64, 277
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 74, 94, 278
BstXI CCANNNNNNTGG 1 cut(s) 262
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 64, 277
Cac8I GCNNGC 2 cut(s) 271, 275
Cfr13I GGNCC 1 cut(s) 245
CviAII CATG 1 cut(s) 270
CviJI RGCY 4 cut(s) 47, 85, 247, 254
CviKI_1 RGCY 4 cut(s) 47, 85, 247, 254
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 1 cut(s) 273
FaiI YATR 3 cut(s) 208, 271, 292
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 3 cut(s) 63, 83, 267
FokI GGATG 2 cut(s) 71, 264
Fsp4HI GCNGC 3 cut(s) 63, 83, 267
GluI GCNGC 3 cut(s) 63, 83, 267
HaeIII GGCC 1 cut(s) 247
Hin1II CATG 1 cut(s) 273
HinfI GANTC 2 cut(s) 19, 197
HpyAV CCTTC 2 cut(s) 121, 135
HpyCH4V TGCA 1 cut(s) 62
Hsp92II CATG 1 cut(s) 273
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 5 cut(s) 29, 41, 141, 200, 287
Lsp1109I GCAGC 3 cut(s) 74, 94, 278
LweI GCATC 2 cut(s) 49, 286
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 127, 136, 161, 188
MluCI AATT 2 cut(s) 25, 95
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 2 cut(s) 96, 145
MseI TTAA 1 cut(s) 233
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 14
NspI RCATGY 1 cut(s) 273
PaeI GCATGC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 19, 197
PkrI GCNGC 3 cut(s) 64, 84, 268
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 3 cut(s) 63, 83, 267
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 245
SetI ASST 1 cut(s) 87
SfaNI GCATC 2 cut(s) 49, 286
SphI GCATGC 1 cut(s) 273
Sse9I AATT 2 cut(s) 25, 95
TasI AATT 2 cut(s) 25, 95
TfiI GAWTC 2 cut(s) 19, 197
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseI GCWGC 3 cut(s) 62, 82, 266
TspDTI ATGAA 1 cut(s) 274
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.