Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003936.1

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Forward (+)

136684 .. 139609

Gene Structure 2926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003936.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgttgatctggtgccggattccaaattctaacaagactgataaggcttcaatgctggatgaagcaattgagtatttgaagcagctccagcttcaagtacaggggagaaagcaagaaacagaagaagaagagggagacgggaaggacaggaggcagagaaatccaaaagaggagaagaactgctatacttcacagattcaagataatttagctgtgaacttcagccgggagctggctgactatattatttacatcatagatgtatctggaggtgataaaatttcacgaaaaggtggccctgcaatcactcaagctgaccttctggtatgtggttttcagatattcactgctgctgcctttgttgtggatactatattctatactgttactgatgataattcagctgcgaacttcagcagggagctggctgactatattgtttacatcatagatgtatctggtggtgataaaattccacgacaaggtggcccaagaatcactcaagctgaccttctggatgactgtgaggtctggaagcctttgtctagaatcaagagtgtgccaccgacatcaagagcaaaaaaagcttgttctaagtattggatattgctgtcttcagcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

cobW

Protein Analysis

207

Amino Acids

23.27

Weight (kDa)

5.2

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	25, 279, 471
AcuI	CTGAAG	3 cut(s)	205, 397, 600
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	232, 482
AgsI	TTSAA	4 cut(s)	51, 79, 95, 200
AluBI	AGCT	9 cut(s)	85, 91, 212, 232, 314, 404, 424, 506, 587
AluI	AGCT	9 cut(s)	85, 91, 212, 232, 314, 404, 424, 506, 587
Alw26I	GTCTC	1 cut(s)	129
AoxI	GGCC	2 cut(s)	295, 487
ApeKI	GCWGC	4 cut(s)	82, 350, 353, 404
ApoI	RAATTY	3 cut(s)	25, 279, 471
AspS9I	GGNCC	2 cut(s)	296, 488
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	284, 476
BanI	GGYRCC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	4 cut(s)	94, 337, 340, 391
BciVI	GTATCC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	4 cut(s)	83, 351, 354, 405
BlsI	GCNGC	4 cut(s)	84, 352, 355, 406
Bme1390I	CCNGG	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	296, 488
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	2 cut(s)	71, 288
BpuEI	CTTGAG	2 cut(s)	294, 486
BpuMI	CCSGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 482
BseGI	GGATG	2 cut(s)	64, 523
BseLI	CCNNNNNNNGG	2 cut(s)	232, 482
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	94, 337, 340, 391
BshFI	GGCC	2 cut(s)	297, 489
BshNI	GGYRCC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	16, 226
BslI	CCNNNNNNNGG	2 cut(s)	232, 482
BsmAI	GTCTC	1 cut(s)	129
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	297, 489
Bsp143I	GATC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	297, 489
BspLI	GGNNCC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	12
BssMI	GATC	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	385, 524
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	234, 426
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	64, 523
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 584
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	4 cut(s)	94, 337, 340, 391
BstV2I	GAAGAC	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	297, 489
BtsCI	GGATG	2 cut(s)	64, 523
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	234, 426
Cfr13I	GGNCC	2 cut(s)	296, 488
Csp6I	GTAC	1 cut(s)	98
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	205, 397, 600
Esp3I	CGTCTC	1 cut(s)	129
FaiI	YATR	8 cut(s)	186, 243, 257, 328, 374, 381, 435, 449
FalI	AAGNNNNNCTT	4 cut(s)	303, 335, 495, 527
Fnu4HI	GCNGC	4 cut(s)	83, 351, 354, 405
FokI	GGATG	2 cut(s)	71, 530
Fsp4HI	GCNGC	4 cut(s)	83, 351, 354, 405
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	4 cut(s)	83, 351, 354, 405
GsuI	CTGGAG	2 cut(s)	71, 288
HaeIII	GGCC	2 cut(s)	297, 489
HapII	CCGG	2 cut(s)	16, 226
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	4 cut(s)	19, 196, 495, 549
HpaII	CCGG	2 cut(s)	16, 226
HphI	GGTGA	2 cut(s)	284, 476
Hpy166II	GTNNAC	2 cut(s)	217, 442
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	8 cut(s)	200, 267, 285, 515, 532, 546, 553, 573
Hpy8I	GTNNAC	2 cut(s)	217, 442
HpyAV	CCTTC	3 cut(s)	136, 329, 521
HpyCH4III	ACNGT	2 cut(s)	385, 524
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 584
HpyF3I	CTNAG	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	3 cut(s)	90, 229, 421
Lsp1109I	GCAGC	4 cut(s)	94, 337, 340, 391
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	5 cut(s)	134, 137, 140, 187, 606
MfeI	CAATTG	1 cut(s)	66
MluCI	AATT	6 cut(s)	25, 66, 205, 279, 397, 471
MnlI	CCTC	5 cut(s)	124, 144, 163, 263, 520
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	16, 226
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	88, 584
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	6
NlaIV	GGNNCC	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	19, 196, 495, 549
PkrI	GCNGC	4 cut(s)	84, 352, 355, 406
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	2 cut(s)	296, 488
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SatI	GCNGC	4 cut(s)	83, 351, 354, 405
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	296, 488
ScrFI	CCNGG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	309, 501
SmoI	CTYRAG	2 cut(s)	309, 501
Sse9I	AATT	6 cut(s)	25, 66, 205, 279, 397, 471
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	385, 524
TasI	AATT	6 cut(s)	25, 66, 205, 279, 397, 471
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	4 cut(s)	19, 196, 495, 549
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	4 cut(s)	82, 350, 353, 404
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	352
XapI	RAATTY	3 cut(s)	25, 279, 471
XbaI	TCTAGA	1 cut(s)	545
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.