Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Reverse (-)

19845488 .. 19855530

Gene Structure 10043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG179300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTGATCTGGTGCCTGATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAAGCAGTTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGAGGGAAGAAAGAAAGAAACAGAAGAAGGGGGAGAAAGGAAGAAACAGAAGAAGGGGGAGACGGGAAGGACAGAAGAGGCAGGGAAATCCAAAAGACGAGAAGAACTGCTCTACTTCACAGATTCAAGGCATACGTATCATCATGAAACCATATACATACGCCAACATGTGCAACACAAGGGGACATGAAGAATTCACCTCATGCCACATCCAACTGCTGCAACAACGTACCTTCCGAAATAGATTGACCTGGTGTTGGAGAATGATGACCAAGGTTGCTGTCACCTCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

131

Amino Acids

15.68

Weight (kDa)

10.17

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	25, 293
AfaI	GTAC	2 cut(s)	99, 331
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	4 cut(s)	51, 79, 95, 227
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	85, 91
AluI	AGCT	2 cut(s)	85, 91
Alw26I	GTCTC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	82, 319
ApoI	RAATTY	2 cut(s)	25, 293
AsuHPI	GGTGA	2 cut(s)	289, 376
BanI	GGYRCC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	94, 306
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	394
BisI	GCNGC	2 cut(s)	83, 320
BlsI	GCNGC	2 cut(s)	84, 321
Bme1390I	CCNGG	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	64, 309
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	94, 306
BshNI	GGYRCC	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	64, 309
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	352
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	350
BstSNI	TACGTA	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	94, 306
BtsCI	GGATG	2 cut(s)	64, 309
CciI	TCATGA	1 cut(s)	243
CsiI	ACCWGGT	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	98, 330
CviAII	CATG	4 cut(s)	244, 268, 287, 303
CviJI	RGCY	3 cut(s)	47, 85, 91
CviKI_1	RGCY	3 cut(s)	47, 85, 91
CviQI	GTAC	2 cut(s)	98, 330
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco105I	TACGTA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	4 cut(s)	247, 271, 290, 306
FaiI	YATR	8 cut(s)	233, 245, 253, 255, 259, 269, 288, 304
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	4 cut(s)	243, 267, 286, 302
Fnu4HI	GCNGC	2 cut(s)	83, 320
FokI	GGATG	2 cut(s)	71, 296
Fsp4HI	GCNGC	2 cut(s)	83, 320
FspBI	CTAG	1 cut(s)	394
GluI	GCNGC	2 cut(s)	83, 320
GsuI	CTGGAG	1 cut(s)	71
Hin1II	CATG	4 cut(s)	247, 271, 290, 306
HinfI	GANTC	2 cut(s)	19, 223
HphI	GGTGA	2 cut(s)	289, 376
Hpy188I	TCNGA	1 cut(s)	338
Hpy188III	TCNNGA	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	121, 147, 161, 343
HpyCH4IV	ACGT	2 cut(s)	235, 328
HpyCH4V	TGCA	2 cut(s)	273, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpySE526I	ACGT	2 cut(s)	235, 328
Hsp92II	CATG	4 cut(s)	247, 271, 290, 306
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	29, 41, 101, 167, 337, 364
Lsp1109I	GCAGC	2 cut(s)	94, 306
MabI	ACCWGGT	1 cut(s)	350
MaeI	CTAG	1 cut(s)	394
MaeII	ACGT	2 cut(s)	235, 328
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	7 cut(s)	119, 136, 153, 162, 187, 214, 302
MluCI	AATT	2 cut(s)	25, 293
MmeI	TCCRAC	2 cut(s)	337, 338
MnlI	CCTC	3 cut(s)	96, 171, 310
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	4 cut(s)	247, 271, 290, 306
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	271
PagI	TCATGA	1 cut(s)	243
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	19, 223
PkrI	GCNGC	2 cut(s)	84, 321
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	14
RsaI	GTAC	2 cut(s)	99, 331
RsaNI	GTAC	2 cut(s)	98, 330
SatI	GCNGC	2 cut(s)	83, 320
Sau3AI	GATC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	9 cut(s)	87, 93, 238, 302, 331, 335, 353, 378, 389
SexAI	ACCWGGT	1 cut(s)	350
SnaBI	TACGTA	1 cut(s)	236
Sse9I	AATT	2 cut(s)	25, 293
SspMI	CTAG	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	372
TaiI	ACGT	2 cut(s)	238, 331
TasI	AATT	2 cut(s)	25, 293
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	19, 223
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	2 cut(s)	82, 319
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	3 cut(s)	75, 260, 303
XapI	RAATTY	2 cut(s)	25, 293
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.