RLG00000023114

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002695
Physical Location & Seq
Forward (+)
18325411 .. 18331175
5765 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023114

Sequence Viewer

Length: 462 bp
ATGTATACAAACAAAAACAAGCGAAATTCTAGTCCAGTTGAGAGAACAGCTCCTGTTGTCGATAACGCTAAGACTGATAAGGCTTCAATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGATTCAAGATAATTTATCTGGGAACTTCAGCGGGGAGCTGGCTGACTATATTATTTACATCATAGATGTATCTGGTGGTGATAAAATTCCACGACAAGGTGGCCCTGGAATCACTGAAGCTGACCTTCTGTCATGCATCAAAGTTGCAATGGACTTTGTCTCATGTGAAAATATCGGTGAGTGCTTTCACCTGACAGAAGCATTCCGCACACTTCCGGAAAATCATAGGGCTAAAGCGGACAAATTGGAGGAATTGGGGAGTTTGGTTTCTCTGAAATGGCATTGGCTGAATCATACGCTGAACAAATGGATTTACCAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

154

Amino Acids

17.26

Weight (kDa)

5.34

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 3 cut(s) 168, 343, 374
AcsI RAATTY 2 cut(s) 25, 222
AcuI CTGAAG 2 cut(s) 148, 273
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 4 cut(s) 87, 115, 131, 143
AhdI GACNNNNNGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 5 cut(s) 50, 121, 127, 175, 257
AluI AGCT 5 cut(s) 50, 121, 127, 175, 257
Alw26I GTCTC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 2 cut(s) 25, 222
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 227, 317, 326
BbvI GCAGC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 243
BmeRI GACNNNNNGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 282
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpmI CTGGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 352
BspACI CCGC 3 cut(s) 168, 343, 374
BspANI GGCC 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 241
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 134
CviAII CATG 2 cut(s) 270, 300
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 69
DriI GACNNNNNGTC 1 cut(s) 265
Eam1105I GACNNNNNGTC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 148, 273
EcoRII CCWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 275
FaeI CATG 2 cut(s) 273, 303
FaiI YATR 7 cut(s) 6, 186, 200, 271, 301, 363, 432
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 2 cut(s) 269, 299
FauI CCCGC 1 cut(s) 161
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 353
Hin1II CATG 2 cut(s) 273, 303
HinfI GANTC 3 cut(s) 139, 246, 427
HpaII CCGG 1 cut(s) 353
HphI GGTGA 3 cut(s) 227, 317, 326
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 2 cut(s) 143, 353
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 272
HpyCH4V TGCA 2 cut(s) 273, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 2 cut(s) 273, 303
Kpn2I TCCGGA 1 cut(s) 352
LmnI GCTCC 3 cut(s) 55, 126, 172
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 30
MfeI CAATTG 1 cut(s) 102
MluCI AATT 6 cut(s) 25, 102, 148, 222, 380, 389
MnlI CCTC 1 cut(s) 379
Mph1103I ATGCAT 1 cut(s) 275
MroI TCCGGA 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 124
NlaIII CATG 2 cut(s) 273, 303
NsiI ATGCAT 1 cut(s) 275
PctI GAATGC 1 cut(s) 338
PfeI GAWTC 3 cut(s) 139, 246, 427
PflFI GACNNNGTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SatI GCNGC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 243
SetI ASST 8 cut(s) 52, 123, 129, 177, 238, 259, 264, 330
SfaNI GCATC 1 cut(s) 282
Sse9I AATT 6 cut(s) 25, 102, 148, 222, 380, 389
SsiI CCGC 3 cut(s) 168, 343, 374
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 241
TaqI TCGA 1 cut(s) 60
TasI AATT 6 cut(s) 25, 102, 148, 222, 380, 389
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 3 cut(s) 139, 246, 427
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 293
XapI RAATTY 2 cut(s) 25, 222
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.