Rh7DG359700

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002695
Physical Location & Seq
Forward (+)
47907219 .. 47907668
450 bp
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UTR
Exon/CDS
Intron
Rh7DG359700.1

Sequence Viewer

Length: 450 bp
ATGCATGTGCTCTGTAATCCTTTGCAGCATGTTACTCATGCTATACATGATCAGACTGTTTATCTCACCGTGGAGCACAAGAGGAGGCTCAAGGAGGAATTTGGTATCGAGCCATGGACATTTGTCCAAAAGCTTGGAGATGCTGTTTTTATTCCTGCAGGTTGTCCTCATCAGGTGAGGAACTTGAAGTCTTGTGTCAAAGTTGCACTGGACTTTGTTTCCCCTGAGAATGTGGGTGAGTGCTTTCGTTTGACAGAAGAGTTTCGCACACTTCCGACAAACCACAGAGCCCATGAGGACAGGCTGGAGGTGAAGAAAATGATTGTGCATGCTGTTTGTGAAGCTGTGAAGGAGATTTCTGGTGAGAATGTGATGACTGAGGATGCGAAGTCTAGGGGAGGCGCAAGGAAATTAAGGCAAGGTGTAAGGCGTATGTCTTACAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

149

Amino Acids

17.12

Weight (kDa)

8.87

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 5 - 72 2.7e-13 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 98
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 2 cut(s) 133, 344
AluI AGCT 2 cut(s) 133, 344
Alw21I GWGCWC 2 cut(s) 12, 78
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 404
AsuHPI GGTGA 5 cut(s) 58, 187, 248, 322, 374
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 12, 78
BbvI GCAGC 1 cut(s) 37
BclI TGATCA 1 cut(s) 49
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 149
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmsI GCATC 2 cut(s) 130, 373
BoxI GACNNNNGTC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 69, 113
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 69, 113
BseGI GGATG 1 cut(s) 388
BseMII CTCAG 2 cut(s) 216, 369
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 12, 78
Bsp1286I GDGCHC 3 cut(s) 12, 78, 292
Bsp143I GATC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 217, 370
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 69, 113
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 58, 70
Bst6I CTCTTC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 2 cut(s) 225, 378
BstDSI CCRYGG 2 cut(s) 69, 113
BstF5I GGATG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstNSI RCATGY 3 cut(s) 8, 32, 332
BstPAI GACNNNNGTC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 134
BtgI CCRYGG 2 cut(s) 69, 113
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 1 cut(s) 404
CviAII CATG 7 cut(s) 5, 29, 38, 47, 114, 293, 329
CviJI RGCY 6 cut(s) 88, 112, 133, 290, 304, 344
CviKI_1 RGCY 6 cut(s) 88, 112, 133, 290, 304, 344
DdeI CTNAG 2 cut(s) 225, 378
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 7 cut(s) 8, 32, 41, 50, 117, 296, 332
FaiI YATR 9 cut(s) 6, 30, 39, 44, 48, 115, 294, 330, 434
FatI CATG 7 cut(s) 4, 28, 37, 46, 113, 292, 328
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 403
GluI GCNGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 326
HhaI GCGC 1 cut(s) 404
Hin1II CATG 7 cut(s) 8, 32, 41, 50, 117, 296, 332
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 131
HphI GGTGA 5 cut(s) 58, 187, 248, 322, 374
Hpy188I TCNGA 2 cut(s) 54, 276
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 58, 70
HpyCH4V TGCA 5 cut(s) 4, 25, 158, 206, 328
HpyF3I CTNAG 2 cut(s) 225, 378
Hsp92II CATG 7 cut(s) 8, 32, 41, 50, 117, 296, 332
HspAI GCGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 144, 158, 168, 194, 237, 286, 290, 345
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 130, 373
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 269, 325
MhlI GDGCHC 3 cut(s) 12, 78, 292
MluCI AATT 2 cut(s) 98, 410
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 9 cut(s) 75, 78, 88, 171, 177, 289, 301, 373, 392
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 413
NcoI CCATGG 1 cut(s) 113
NdeII GATC 1 cut(s) 49
NlaIII CATG 7 cut(s) 8, 32, 41, 50, 117, 296, 332
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 8, 32, 332
PaeI GCATGC 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 261
PkrI GCNGC 1 cut(s) 27
PshAI GACNNNNGTC 1 cut(s) 122
PstI CTGCAG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 49
SbfI CCTGCAGG 1 cut(s) 160
SdaI CCTGCAGG 1 cut(s) 160
SduI GDGCHC 3 cut(s) 12, 78, 292
SetI ASST 6 cut(s) 135, 163, 177, 312, 346, 424
SfaNI GCATC 2 cut(s) 130, 373
SfcI CTRYAG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SphI GCATGC 1 cut(s) 332
Sse8387I CCTGCAGG 1 cut(s) 160
Sse9I AATT 2 cut(s) 98, 410
SspMI CTAG 1 cut(s) 393
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 58, 70
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 98, 410
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 1 cut(s) 213
TseI GCWGC 1 cut(s) 25
TspRI CASTG 1 cut(s) 213
XapI RAATTY 1 cut(s) 98
XceI RCATGY 3 cut(s) 8, 32, 332
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.