Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Reverse (-)

6021939 .. 6025014

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026781

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATATTCTGGTGCCTGATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAAGCAATTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGTCTCTTAGCCCCGCGGACGATGCCGGAGCCAGATCTCAAACCCACCCATTTTGTACCCTCAAAAGTCATCCATTGCAGAATGAACCCCATCTTTGGTTCTGCCTAAGTCTCCATGGTCAGACGTCATGGGAGAGAGCTCGCCACAGCCCGGCCTCAGGCTCATCGACCGTCTCTACTCCGCACACCGTGGGTGCACCAGCTCGGTCACCTCAACGAAAGCGAGAGGGAGGGCCAGCTAGTGTACCCACGGTATGCCGAGTAGAGACGGTCGAGGAGCCTGCCGCCGAGCTGTGGCGAGCTCTTTCACATGCATCTGACCATGGAGACTTGGGCAGAACCAAAGATGGGGTTCATTCTGCAATGGATGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009900 GO:0009908 GO:0010029 GO:0010047 GO:0010114 GO:0010154 GO:0010187 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048511 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900140 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

159

Amino Acids

17.34

Weight (kDa)

6.28

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	12
AccII	CGCG	1 cut(s)	116
AciI	CCGC	4 cut(s)	114, 116, 281, 384
AcsI	RAATTY	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	3 cut(s)	99, 157, 345
AfiI	CCNNNNNNNGG	5 cut(s)	195, 250, 257, 393, 447
AgsI	TTSAA	3 cut(s)	51, 79, 95
AluBI	AGCT	7 cut(s)	85, 91, 239, 302, 338, 391, 401
AluI	AGCT	7 cut(s)	85, 91, 239, 302, 338, 391, 401
Alw21I	GWGCWC	3 cut(s)	241, 298, 403
Alw26I	GTCTC	5 cut(s)	108, 215, 277, 359, 420
Alw44I	GTGCAC	1 cut(s)	294
AoxI	GGCC	2 cut(s)	252, 332
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	300
AxyI	CCTNAGG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	2 cut(s)	241, 403
Bbv12I	GWGCWC	3 cut(s)	241, 298, 403
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	2 cut(s)	198, 440
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	5 cut(s)	108, 215, 277, 359, 420
BfaI	CTAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	2 cut(s)	83, 384
BlsI	GCNGC	2 cut(s)	84, 385
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	3 cut(s)	14, 130, 378
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	112, 422
BpmI	CTGGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	5 cut(s)	114, 214, 288, 348, 421
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 250, 257, 393, 447
Bse21I	CCTNAGG	1 cut(s)	256
Bse3DI	GCAATG	2 cut(s)	173, 468
BseDI	CCNNGG	5 cut(s)	114, 214, 288, 348, 421
BseGI	GGATG	3 cut(s)	64, 169, 472
BseLI	CCNNNNNNNGG	5 cut(s)	195, 250, 257, 393, 447
BseMI	GCAATG	2 cut(s)	173, 468
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	2 cut(s)	270, 372
BshFI	GGCC	2 cut(s)	254, 334
BshNI	GGYRCC	1 cut(s)	12
BsiEI	CGRYCG	2 cut(s)	270, 372
BsiHKAI	GWGCWC	3 cut(s)	241, 298, 403
BsiSI	CCGG	2 cut(s)	126, 251
BslI	CCNNNNNNNGG	5 cut(s)	195, 250, 257, 393, 447
BsmAI	GTCTC	5 cut(s)	108, 215, 277, 359, 420
BsmBI	CGTCTC	2 cut(s)	277, 359
BsnI	GGCC	2 cut(s)	254, 334
Bsp1286I	GDGCHC	3 cut(s)	241, 298, 403
Bsp143I	GATC	1 cut(s)	134
Bsp19I	CCATGG	2 cut(s)	214, 421
BspACI	CCGC	4 cut(s)	114, 116, 281, 384
BspANI	GGCC	2 cut(s)	254, 334
BspCNI	CTCAG	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	3 cut(s)	14, 130, 378
BspT107I	GGYRCC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	173, 468
BssECI	CCNNGG	5 cut(s)	114, 214, 288, 348, 421
BssMI	GATC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	2 cut(s)	214, 421
Bst4CI	ACNGT	5 cut(s)	102, 271, 289, 352, 370
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	241, 336, 381, 399
BstDEI	CTNAG	3 cut(s)	107, 206, 256
BstDSI	CCRYGG	5 cut(s)	114, 214, 288, 348, 421
BstEII	GGTNACC	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	64, 169, 472
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	5 cut(s)	108, 215, 277, 359, 420
BstMBI	GATC	1 cut(s)	134
BstMCI	CGRYCG	2 cut(s)	270, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 122
BstNSI	RCATGY	1 cut(s)	413
BstPI	GGTNACC	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu36I	CCTNAGG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	254, 334
BtgI	CCRYGG	5 cut(s)	114, 214, 288, 348, 421
BtsCI	GGATG	3 cut(s)	64, 169, 472
Cac8I	GCNNGC	4 cut(s)	241, 336, 381, 399
Cfr13I	GGNCC	1 cut(s)	332
Cfr42I	CCGCGG	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	98, 156, 344
CspCI	CAANNNNNGTGG	2 cut(s)	134, 169
CviAII	CATG	4 cut(s)	215, 228, 410, 422
CviQI	GTAC	3 cut(s)	98, 156, 344
DdeI	CTNAG	3 cut(s)	107, 206, 256
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
DraIII	CACNNNGTG	1 cut(s)	289
Ecl136II	GAGCTC	2 cut(s)	239, 401
Eco130I	CCWWGG	2 cut(s)	214, 421
Eco24I	GRGCYC	2 cut(s)	241, 403
Eco53kI	GAGCTC	2 cut(s)	239, 401
Eco81I	CCTNAGG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	306
EcoICRI	GAGCTC	2 cut(s)	239, 401
EcoO65I	GGTNACC	1 cut(s)	306
EcoT14I	CCWWGG	2 cut(s)	214, 421
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	2 cut(s)	241, 403
ErhI	CCWWGG	2 cut(s)	214, 421
Esp3I	CGTCTC	2 cut(s)	277, 359
FaeI	CATG	4 cut(s)	218, 231, 413, 425
FaiI	YATR	5 cut(s)	216, 229, 355, 411, 423
FatI	CATG	4 cut(s)	214, 227, 409, 421
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	83, 384
FokI	GGATG	2 cut(s)	71, 156
FriOI	GRGCYC	2 cut(s)	241, 403
Fsp4HI	GCNGC	2 cut(s)	83, 384
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	83, 384
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	254, 334
HapII	CCGG	2 cut(s)	126, 251
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	4 cut(s)	218, 231, 413, 425
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	126, 251
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	2 cut(s)	296, 344
Hpy188I	TCNGA	2 cut(s)	222, 418
Hpy8I	GTNNAC	2 cut(s)	296, 344
HpyCH4III	ACNGT	5 cut(s)	102, 271, 289, 352, 370
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	178, 296, 413, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 122
HpyF3I	CTNAG	3 cut(s)	107, 206, 256
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	4 cut(s)	218, 231, 413, 425
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	3 cut(s)	90, 128, 376
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	112, 422
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	3 cut(s)	241, 298, 403
MluCI	AATT	2 cut(s)	25, 66
MnlI	CCTC	6 cut(s)	170, 265, 319, 321, 323, 367
Mph1103I	ATGCAT	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	126, 251
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	88, 122
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	2 cut(s)	214, 421
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	4 cut(s)	218, 231, 413, 425
NlaIV	GGNNCC	3 cut(s)	14, 130, 378
NmeAIII	GCCGAG	2 cut(s)	383, 412
NmuCI	GTSAC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	84, 385
Psp124BI	GAGCTC	2 cut(s)	241, 403
PspEI	GGTNACC	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	14, 130, 378
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	3 cut(s)	99, 157, 345
RsaNI	GTAC	3 cut(s)	98, 156, 344
SacI	GAGCTC	2 cut(s)	241, 403
SacII	CCGCGG	1 cut(s)	117
SatI	GCNGC	2 cut(s)	83, 384
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	3 cut(s)	241, 298, 403
SetI	ASST	9 cut(s)	87, 93, 227, 241, 304, 313, 340, 393, 403
SfaNI	GCATC	2 cut(s)	112, 422
Sfr303I	CCGCGG	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	117
Sse9I	AATT	2 cut(s)	25, 66
SsiI	CCGC	4 cut(s)	114, 116, 281, 384
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	2 cut(s)	241, 403
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	2 cut(s)	214, 421
TaaI	ACNGT	5 cut(s)	102, 271, 289, 352, 370
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	266, 372
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	25, 66
TatI	WGTACW	1 cut(s)	97
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	3 cut(s)	75, 198, 443
VneI	GTGCAC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	413
XspI	CTAG	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.