Helix-loop-helix DNA-binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g17910 pycom07g08170 |
| rosa_chinensis | RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301 |
| rosa_laevigata | RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781 |
| rosa_multiflora | Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250 |
| rosa_rugosa | Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200 |
| rosa_samantha | Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700 |
| rosa_wichuraiana | Rw1G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 12 |
| AcsI | RAATTY | 1 cut(s) | 25 |
| AfaI | GTAC | 1 cut(s) | 99 |
| AgsI | TTSAA | 4 cut(s) | 51, 79, 95, 227 |
| AluBI | AGCT | 2 cut(s) | 85, 91 |
| AluI | AGCT | 2 cut(s) | 85, 91 |
| Alw26I | GTCTC | 1 cut(s) | 154 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| ApoI | RAATTY | 1 cut(s) | 25 |
| BanI | GGYRCC | 1 cut(s) | 12 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BcoDI | GTCTC | 1 cut(s) | 154 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| BmiI | GGNNCC | 1 cut(s) | 14 |
| BpmI | CTGGAG | 1 cut(s) | 71 |
| BseGI | GGATG | 1 cut(s) | 64 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BshNI | GGYRCC | 1 cut(s) | 12 |
| BsmAI | GTCTC | 1 cut(s) | 154 |
| BsmBI | CGTCTC | 1 cut(s) | 154 |
| Bsp143I | GATC | 1 cut(s) | 6 |
| BspHI | TCATGA | 1 cut(s) | 267 |
| BspLI | GGNNCC | 1 cut(s) | 14 |
| BspT107I | GGYRCC | 1 cut(s) | 12 |
| BssMI | GATC | 1 cut(s) | 6 |
| Bst4CI | ACNGT | 1 cut(s) | 264 |
| Bst6I | CTCTTC | 1 cut(s) | 170 |
| BstDEI | CTNAG | 1 cut(s) | 286 |
| BstF5I | GGATG | 1 cut(s) | 64 |
| BstKTI | GATC | 1 cut(s) | 9 |
| BstMAI | GTCTC | 1 cut(s) | 154 |
| BstMBI | GATC | 1 cut(s) | 6 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 88 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BtsCI | GGATG | 1 cut(s) | 64 |
| BtsIMutI | CAGTG | 1 cut(s) | 260 |
| CciI | TCATGA | 1 cut(s) | 267 |
| Csp6I | GTAC | 1 cut(s) | 98 |
| CviAII | CATG | 1 cut(s) | 268 |
| CviJI | RGCY | 4 cut(s) | 47, 85, 91, 282 |
| CviKI_1 | RGCY | 4 cut(s) | 47, 85, 91, 282 |
| CviQI | GTAC | 1 cut(s) | 98 |
| DdeI | CTNAG | 1 cut(s) | 286 |
| DpnI | GATC | 1 cut(s) | 8 |
| DpnII | GATC | 1 cut(s) | 6 |
| Eam1104I | CTCTTC | 1 cut(s) | 170 |
| EarI | CTCTTC | 1 cut(s) | 170 |
| Esp3I | CGTCTC | 1 cut(s) | 154 |
| FaeI | CATG | 1 cut(s) | 271 |
| FaiI | YATR | 3 cut(s) | 257, 269, 292 |
| FatI | CATG | 1 cut(s) | 267 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| FokI | GGATG | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| GluI | GCNGC | 1 cut(s) | 83 |
| GsuI | CTGGAG | 1 cut(s) | 71 |
| Hin1II | CATG | 1 cut(s) | 271 |
| HinfI | GANTC | 3 cut(s) | 19, 223, 231 |
| Hpy188III | TCNNGA | 1 cut(s) | 268 |
| HpyAV | CCTTC | 3 cut(s) | 121, 147, 161 |
| HpyCH4III | ACNGT | 1 cut(s) | 264 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 88 |
| HpyF3I | CTNAG | 1 cut(s) | 286 |
| Hsp92II | CATG | 1 cut(s) | 271 |
| Kzo9I | GATC | 1 cut(s) | 6 |
| LmnI | GCTCC | 1 cut(s) | 90 |
| LpnPI | CCDG | 4 cut(s) | 29, 41, 101, 167 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| MalI | GATC | 1 cut(s) | 8 |
| MboI | GATC | 1 cut(s) | 6 |
| MboII | GAAGA | 6 cut(s) | 119, 136, 153, 162, 187, 214 |
| MluCI | AATT | 1 cut(s) | 25 |
| MnlI | CCTC | 2 cut(s) | 96, 171 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 88 |
| NdeII | GATC | 1 cut(s) | 6 |
| NlaIII | CATG | 1 cut(s) | 271 |
| NlaIV | GGNNCC | 1 cut(s) | 14 |
| PagI | TCATGA | 1 cut(s) | 267 |
| PfeI | GAWTC | 3 cut(s) | 19, 223, 231 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PspN4I | GGNNCC | 1 cut(s) | 14 |
| RsaI | GTAC | 1 cut(s) | 99 |
| RsaNI | GTAC | 1 cut(s) | 98 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau3AI | GATC | 1 cut(s) | 6 |
| SetI | ASST | 2 cut(s) | 87, 93 |
| Sse9I | AATT | 1 cut(s) | 25 |
| TaaI | ACNGT | 1 cut(s) | 264 |
| TasI | AATT | 1 cut(s) | 25 |
| TatI | WGTACW | 1 cut(s) | 97 |
| TfiI | GAWTC | 3 cut(s) | 19, 223, 231 |
| TscAI | CASTG | 1 cut(s) | 267 |
| TseI | GCWGC | 1 cut(s) | 82 |
| TspDTI | ATGAA | 2 cut(s) | 75, 256 |
| TspRI | CASTG | 1 cut(s) | 267 |
| XapI | RAATTY | 1 cut(s) | 25 |