Rroxscaffold_5G00372980

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002695
Physical Location & Seq
Reverse (-)
54261883 .. 54268290
6408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372980.1

Sequence Viewer

Length: 675 bp
ATGGGCCCAAACAATCCCGGAAACGGGGAAGACCACAATCCGCTAGCCAAGCCCGACCCATCCCTACCGGGAACTCCGGGGCTAGATTGGCAGAAGCTGTACAGAAGTTGGGAAGATAATCTGGATGTCGGTTTTATTGCGTTGAAGGTGATATTGCTTGATTTTGGTTACACAAGTGTGTTGGACGATGGGAATCAGACGCAGGAGAAGAGTTTCATATATTCATGCATCAAAGTTGCAATGGACTTTGTCTCACCTGAAAATGTCGGCGAGTGCTTTCACTGGACAGAACTATTCCGCACACTTCCAGAAAATCATAGGGCTAAAGAGGACAAATTGGAGGTCAAGAAAATGATTGTTCATTCTGTCACTGATGCTCTGAAGGAACTAAATCAGAATGTGAGACTTACTCTTGAAGAGCCTAAACCTGAAACCAGAGGCTTCGGAAATCTAATTTTGAAGTTTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAAATCCGGTTTCTTTCACAGAAGCTATTGTTCCCTTTGCAATGGGTGGCTATTGATTGTATCTTGGATACTGGATACGATATTCTGATGATTTGCTCTGATGCTGTTACTAGATGTACTGGCCTTGGTCTGTTGACCATTCAGACAATTTTATCTTTGTTTGAGGTAATTCAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

224

Amino Acids

25.29

Weight (kDa)

4.97

Isoelectric Point (pI)

25.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 41, 298
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 2 cut(s) 101, 613
AfiI CCNNNNNNNGG 2 cut(s) 23, 24
AgsI TTSAA 5 cut(s) 145, 416, 460, 476, 668
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 2 cut(s) 97, 520
AluI AGCT 2 cut(s) 97, 520
Alw26I GTCTC 2 cut(s) 256, 397
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 2 cut(s) 4, 616
ApaI GGGCCC 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
Asp700I GAANNNNTTC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 4, 5
AsuC2I CCSGG 3 cut(s) 18, 69, 78
AsuHPI GGTGA 2 cut(s) 160, 246
AsuNHI GCTAGC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 36
BccI CCATC 2 cut(s) 67, 182
BciVI GTATCC 2 cut(s) 556, 563
BcnI CCSGG 3 cut(s) 18, 69, 78
BcoDI GTCTC 2 cut(s) 256, 397
BfaI CTAG 3 cut(s) 44, 83, 606
BfuI GTATCC 2 cut(s) 556, 563
Bme1390I CCNGG 3 cut(s) 18, 69, 78
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 18, 69, 78
BmsI GCATC 3 cut(s) 237, 364, 586
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpuMI CCSGG 3 cut(s) 18, 69, 78
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 77, 619
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 24
Bse1I ACTGG 3 cut(s) 287, 571, 619
Bse3DI GCAATG 2 cut(s) 246, 542
Bse8I GATNNNNATC 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 77, 619
BseGI GGATG 2 cut(s) 59, 130
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 23, 24
BseMI GCAATG 2 cut(s) 246, 542
BseNI ACTGG 3 cut(s) 287, 571, 619
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 2 cut(s) 6, 618
BsiSI CCGG 4 cut(s) 18, 68, 77, 502
BslI CCNNNNNNNGG 2 cut(s) 23, 24
BsmAI GTCTC 2 cut(s) 256, 397
BsnI GGCC 2 cut(s) 6, 618
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 99
BspACI CCGC 2 cut(s) 41, 298
BspANI GGCC 2 cut(s) 6, 618
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 47
BspQI GCTCTTC 1 cut(s) 411
BsrDI GCAATG 2 cut(s) 246, 542
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 3 cut(s) 287, 571, 619
BssECI CCNNGG 2 cut(s) 77, 619
BssT1I CCWWGG 1 cut(s) 619
Bst6I CTCTTC 2 cut(s) 203, 411
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 468, 672
BstF5I GGATG 2 cut(s) 59, 130
BstMAI GTCTC 2 cut(s) 256, 397
BstMWI GCNNNNNNNGC 2 cut(s) 49, 88
BstSCI CCNGG 3 cut(s) 16, 67, 76
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 36
BsuI GTATCC 2 cut(s) 556, 563
BsuRI GGCC 2 cut(s) 6, 618
BtsCI GGATG 2 cut(s) 59, 130
BtsIMutI CAGTG 2 cut(s) 280, 369
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 4, 5
CseI GACGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 100, 612
CviAII CATG 1 cut(s) 225
CviQI GTAC 2 cut(s) 100, 612
DdeI CTNAG 2 cut(s) 468, 672
Eam1104I CTCTTC 2 cut(s) 203, 411
EarI CTCTTC 2 cut(s) 203, 411
Eco130I CCWWGG 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 619
EcoT22I ATGCAT 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 619
FaeI CATG 1 cut(s) 228
FaiI YATR 4 cut(s) 218, 220, 226, 318
FatI CATG 1 cut(s) 224
FokI GGATG 2 cut(s) 46, 137
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 3 cut(s) 44, 83, 606
HaeIII GGCC 2 cut(s) 6, 618
HapII CCGG 4 cut(s) 18, 68, 77, 502
HgaI GACGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 228
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 1 cut(s) 193
HpaII CCGG 4 cut(s) 18, 68, 77, 502
HphI GGTGA 2 cut(s) 160, 246
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 7 cut(s) 198, 381, 396, 446, 582, 595, 639
Hpy188III TCNNGA 4 cut(s) 122, 308, 346, 413
Hpy8I GTNNAC 1 cut(s) 630
HpyAV CCTTC 2 cut(s) 139, 376
HpyCH4V TGCA 3 cut(s) 228, 239, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 88
HpyF3I CTNAG 2 cut(s) 468, 672
Hsp92II CATG 1 cut(s) 228
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 1 cut(s) 486
LweI GCATC 3 cut(s) 237, 364, 586
MaeI CTAG 3 cut(s) 44, 83, 606
MaeIII GTNAC 3 cut(s) 167, 367, 601
MboII GAAGA 4 cut(s) 41, 125, 220, 428
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 335, 453, 476, 642, 663
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 4 cut(s) 322, 334, 431, 652
Mph1103I ATGCAT 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 4 cut(s) 18, 68, 77, 502
MspR9I CCNGG 3 cut(s) 18, 69, 78
MwoI GCNNNNNNNGC 2 cut(s) 49, 88
NciI CCSGG 3 cut(s) 18, 69, 78
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 230
OliI CACNNNNGTG 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 193
PflFI GACNNNGTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 6
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
PstNI CAGNNNCTG 1 cut(s) 97
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 2 cut(s) 101, 613
RsaNI GTAC 2 cut(s) 100, 612
RseI CAYNNNNRTG 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 411
Sau96I GGNCC 2 cut(s) 4, 5
ScrFI CCNGG 3 cut(s) 18, 69, 78
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 99, 150, 259, 345, 430, 474, 522, 663
SfaNI GCATC 3 cut(s) 237, 364, 586
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 5 cut(s) 335, 453, 476, 642, 663
SsiI CCGC 2 cut(s) 41, 298
SspMI CTAG 3 cut(s) 44, 83, 606
StyD4I CCNGG 3 cut(s) 16, 67, 76
StyI CCWWGG 1 cut(s) 619
TasI AATT 5 cut(s) 335, 453, 476, 642, 663
TatI WGTACW 2 cut(s) 99, 611
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 2 cut(s) 287, 376
TseFI GTSAC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 205, 213, 350
TspRI CASTG 2 cut(s) 287, 376
Tth111I GACNNNGTC 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 3 cut(s) 44, 83, 606
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.