RLG00000012371

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002695
Physical Location & Seq
Reverse (-)
17993572 .. 17994368
797 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012371

Sequence Viewer

Length: 384 bp
ATGACGACCTTTACATATCCTGTGAATATCTTATCAAGTCTTTTCATAGTCATATTTCGATGCTTGACTGAAACAATTCCCAATTTTATTTGTTTGGGTGCAGATAATTTAGCTGCGAACTTCAGCAGGGAGCTGGCTGACTATATTATTTACATCATAGATGTATCTGGTGGTGATAAAATTCCACGACAAGGTGGCCCTGGAATCACTCAAGCTGACCTTCTGGTGCATTTCAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGATAGCATAAAGTGGAACTTTATCAACTCACTGAAAGAGCACAAGCTGCTGCCAACGCTAATTTTGGATTTACGTATGGATTGGAGGATGGGTTTGATTTTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0065007 GO:0065009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
cobW

Protein Analysis

128

Amino Acids

14.26

Weight (kDa)

5.2

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 191, 269
AjnI CCWGG 2 cut(s) 199, 244
AluBI AGCT 4 cut(s) 113, 133, 215, 322
AluI AGCT 4 cut(s) 113, 133, 215, 322
Alw21I GWGCWC 1 cut(s) 318
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 3 cut(s) 113, 322, 325
ApoI RAATTY 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 185, 284
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 100, 309, 312
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 2 cut(s) 201, 246
BisI GCNGC 3 cut(s) 114, 323, 326
BlsI GCNGC 3 cut(s) 115, 324, 327
Bme1390I CCNGG 2 cut(s) 201, 246
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 2 cut(s) 201, 246
BmsI GCATC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 269
BseBI CCWGG 2 cut(s) 201, 246
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 191, 269
BseXI GCAGC 3 cut(s) 100, 309, 312
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 191, 269
BsnI GGCC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 258
BspANI GGCC 1 cut(s) 198
BspPI GGATC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 201, 246
BstAPI GCANNNNNTGC 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 369
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 2 cut(s) 322, 331
BstNI CCWGG 2 cut(s) 201, 246
BstSCI CCNGG 2 cut(s) 199, 244
BstSNI TACGTA 1 cut(s) 350
BstV1I GCAGC 3 cut(s) 100, 309, 312
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 197
CviJI RGCY 6 cut(s) 113, 133, 137, 198, 215, 322
CviKI_1 RGCY 6 cut(s) 113, 133, 137, 198, 215, 322
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eco105I TACGTA 1 cut(s) 350
Eco32I GATATC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 199, 244
EcoRV GATATC 1 cut(s) 242
FaiI YATR 8 cut(s) 16, 47, 53, 144, 158, 254, 284, 353
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 278, 310
Fnu4HI GCNGC 3 cut(s) 114, 323, 326
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 3 cut(s) 114, 323, 326
GluI GCNGC 3 cut(s) 114, 323, 326
HaeIII GGCC 1 cut(s) 198
HinfI GANTC 1 cut(s) 204
HphI GGTGA 2 cut(s) 185, 284
Hpy188I TCNGA 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 230, 263
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 101, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 322, 331
HpySE526I ACGT 1 cut(s) 349
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 9 cut(s) 33, 112, 119, 153, 186, 209, 213, 231, 258
Lsp1109I GCAGC 3 cut(s) 100, 309, 312
LweI GCATC 1 cut(s) 50
MaeII ACGT 1 cut(s) 349
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 5 cut(s) 75, 82, 106, 180, 336
MnlI CCTC 2 cut(s) 230, 354
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 201, 246
MvaI CCWGG 2 cut(s) 201, 246
MwoI GCNNNNNNNGC 2 cut(s) 322, 331
NdeII GATC 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 3 cut(s) 115, 324, 327
Ppu21I YACGTR 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 199, 244
PspGI CCWGG 2 cut(s) 199, 244
PspPI GGNCC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 3 cut(s) 114, 323, 326
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 201, 246
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SnaBI TACGTA 1 cut(s) 350
Sse9I AATT 5 cut(s) 75, 82, 106, 180, 336
StyD4I CCNGG 2 cut(s) 199, 244
TaiI ACGT 1 cut(s) 352
TaqI TCGA 1 cut(s) 58
TasI AATT 5 cut(s) 75, 82, 106, 180, 336
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TscAI CASTG 1 cut(s) 312
TseI GCWGC 3 cut(s) 113, 322, 325
TspDTI ATGAA 1 cut(s) 34
TspRI CASTG 1 cut(s) 312
XagI CCTNNNNNAGG 1 cut(s) 267
XapI RAATTY 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.