Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Reverse (-)

18032546 .. 18035639

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012376

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTGCAAGTCATCTTGTACTCAAGGTGACTTGCATCCATATCTTAGAAATAGTAATTGATAATGCTTCTGGGGCATTTACTTTTACTAAGCTGGAGGTTAGACGATCGTGGATTTTCTGTGAAATTGGTGATTTTGAAGAGTTGATTGATAATTTAGCTGCGAACTTCAGCAGGGAGCTGGCTGACTATATTATTTACATCATAGATGTATCTGGTGGTGATAAAATTCCACGACAAGGTGGCCCTGGAATCACTCAAGCTGACCTTCTGGTGCATTTCAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGATGGCATAAAGTGGAAATTTATCAACTCACTGAAAGAGCACAAGCTGCTGCCAACGCTAATTTTGGATTTACGTATGGATTGGAGGATGGGTTTGATTTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

cobW

Protein Analysis

144

Amino Acids

16.11

Weight (kDa)

5.29

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	228, 341
AcuI	CTGAAG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	239, 317
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	2 cut(s)	247, 292
AluBI	AGCT	5 cut(s)	94, 161, 181, 263, 370
AluI	AGCT	5 cut(s)	94, 161, 181, 263, 370
Alw21I	GWGCWC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	3 cut(s)	161, 370, 373
ApoI	RAATTY	2 cut(s)	228, 341
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	40, 143, 233, 332
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	148, 357, 360
BccI	CCATC	2 cut(s)	320, 406
BciT130I	CCWGG	2 cut(s)	249, 294
BisI	GCNGC	3 cut(s)	162, 371, 374
BlsI	GCNGC	3 cut(s)	163, 372, 375
Bme1390I	CCNGG	2 cut(s)	249, 294
BmgT120I	GGNCC	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	249, 294
BmsI	GCATC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	2 cut(s)	8, 243
BsaAI	YACGTR	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 317
BseBI	CCWGG	2 cut(s)	249, 294
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	36, 417
BseLI	CCNNNNNNNGG	2 cut(s)	239, 317
BseXI	GCAGC	3 cut(s)	148, 357, 360
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	239, 317
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	107, 306
BspANI	GGCC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	107, 306
Bst2UI	CCWGG	2 cut(s)	249, 294
Bst6I	CTCTTC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	46, 90
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	36, 417
BstKTI	GATC	2 cut(s)	110, 309
BstMBI	GATC	2 cut(s)	107, 306
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 370, 379
BstNI	CCWGG	2 cut(s)	249, 294
BstSCI	CCNGG	2 cut(s)	247, 292
BstSNI	TACGTA	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	148, 357, 360
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	36, 417
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	20
CviJI	RGCY	7 cut(s)	94, 161, 181, 185, 246, 263, 370
CviKI_1	RGCY	7 cut(s)	94, 161, 181, 185, 246, 263, 370
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	46, 90
DpnI	GATC	2 cut(s)	109, 308
DpnII	GATC	2 cut(s)	107, 306
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco105I	TACGTA	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	154
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	247, 292
EcoRV	GATATC	1 cut(s)	290
FaiI	YATR	6 cut(s)	42, 192, 206, 302, 332, 401
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
Fnu4HI	GCNGC	3 cut(s)	162, 371, 374
FokI	GGATG	2 cut(s)	23, 424
Fsp4HI	GCNGC	3 cut(s)	162, 371, 374
GluI	GCNGC	3 cut(s)	162, 371, 374
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	246
HinfI	GANTC	1 cut(s)	252
HphI	GGTGA	4 cut(s)	40, 143, 233, 332
Hpy188I	TCNGA	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	278, 311
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	3 cut(s)	8, 36, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 370, 379
HpyF3I	CTNAG	2 cut(s)	46, 90
HpySE526I	ACGT	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	107, 306
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	3 cut(s)	148, 357, 360
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	109, 308
MboI	GATC	2 cut(s)	107, 306
MboII	GAAGA	2 cut(s)	152, 335
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	6 cut(s)	57, 126, 154, 228, 341, 384
MnlI	CCTC	3 cut(s)	91, 278, 402
MseI	TTAA	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	249, 294
MvaI	CCWGG	2 cut(s)	249, 294
MwoI	GCNNNNNNNGC	3 cut(s)	74, 370, 379
NdeII	GATC	2 cut(s)	107, 306
NmuCI	GTSAC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	252
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	163, 372, 375
Ple19I	CGATCG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	247, 292
PspGI	CCWGG	2 cut(s)	247, 292
PspPI	GGNCC	1 cut(s)	245
PvuI	CGATCG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	3 cut(s)	162, 371, 374
Sau3AI	GATC	2 cut(s)	107, 306
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	249, 294
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	23, 258
SmoI	CTYRAG	2 cut(s)	23, 258
SnaBI	TACGTA	1 cut(s)	398
Sse9I	AATT	6 cut(s)	57, 126, 154, 228, 341, 384
StyD4I	CCNGG	2 cut(s)	247, 292
TaiI	ACGT	1 cut(s)	400
TasI	AATT	6 cut(s)	57, 126, 154, 228, 341, 384
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	161, 370, 373
Tsp45I	GTSAC	1 cut(s)	28
TspRI	CASTG	1 cut(s)	360
XagI	CCTNNNNNAGG	1 cut(s)	315
XapI	RAATTY	2 cut(s)	228, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.