Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Reverse (-)

19728662 .. 19732346

Gene Structure 3685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGACTTTGTCTCACCTGAAAATGTCGGTGAGCACTTTCACTTAACAGAAGTAGTCCGCACACTTCCAGAAAATCATAGGGCTAAAGAGGACAAATTGGAGGGAAGGAAAAGAAAATACAAGATACTAACTCTCATGGAAGAGAAGCAGTTGAATTTTAACCACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

56

Amino Acids

6.7

Weight (kDa)

6.91

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	6, 41
Bbv12I	GWGCWC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	16
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	1 cut(s)	83
CviKI_1	RGCY	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	78, 137
FatI	CATG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	6, 41
Hpy188III	TCNNGA	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	139
LpnPI	CCDG	2 cut(s)	30, 81
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	95, 154
MnlI	CCTC	2 cut(s)	82, 94
MseI	TTAA	2 cut(s)	44, 159
NlaIII	CATG	1 cut(s)	139
PflFI	GACNNNGTC	1 cut(s)	8
PsyI	GACNNNGTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	44, 159
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	1 cut(s)	19
SgeI	CNNG	4 cut(s)	29, 80, 133, 148
Sse9I	AATT	2 cut(s)	95, 154
SsiI	CCGC	1 cut(s)	58
TasI	AATT	2 cut(s)	95, 154
Tru1I	TTAA	2 cut(s)	44, 159
Tru9I	TTAA	2 cut(s)	44, 159
Tth111I	GACNNNGTC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.