lysine-specific demethylase
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g17910 pycom07g08170 |
| rosa_chinensis | RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301 |
| rosa_laevigata | RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781 |
| rosa_multiflora | Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250 |
| rosa_rugosa | Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200 |
| rosa_samantha | Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700 |
| rosa_wichuraiana | Rw1G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 321 |
| AccIII | TCCGGA | 1 cut(s) | 265 |
| AciI | CCGC | 2 cut(s) | 256, 287 |
| AclWI | GGATC | 1 cut(s) | 156 |
| AflIII | ACRYGT | 1 cut(s) | 136 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 29 |
| Alw26I | GTCTC | 2 cut(s) | 214, 319 |
| AlwI | GGATC | 1 cut(s) | 156 |
| Aor13HI | TCCGGA | 1 cut(s) | 265 |
| AspS9I | GGNCC | 1 cut(s) | 91 |
| AsuHPI | GGTGA | 1 cut(s) | 204 |
| AvaII | GGWCC | 1 cut(s) | 91 |
| BcoDI | GTCTC | 2 cut(s) | 214, 319 |
| Bme18I | GGWCC | 1 cut(s) | 91 |
| BmgT120I | GGNCC | 1 cut(s) | 91 |
| BmsI | GCATC | 1 cut(s) | 195 |
| BsaWI | WCCGGW | 1 cut(s) | 265 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| Bse3DI | GCAATG | 2 cut(s) | 107, 204 |
| BseAI | TCCGGA | 1 cut(s) | 265 |
| BseMI | GCAATG | 2 cut(s) | 107, 204 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BsgI | GTGCAG | 1 cut(s) | 117 |
| BsiSI | CCGG | 1 cut(s) | 266 |
| BsmAI | GTCTC | 2 cut(s) | 214, 319 |
| BsmI | GAATGC | 1 cut(s) | 251 |
| Bsp13I | TCCGGA | 1 cut(s) | 265 |
| Bsp143I | GATC | 1 cut(s) | 161 |
| BspACI | CCGC | 2 cut(s) | 256, 287 |
| BspEI | TCCGGA | 1 cut(s) | 265 |
| BspPI | GGATC | 1 cut(s) | 156 |
| BsrDI | GCAATG | 2 cut(s) | 107, 204 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssMI | GATC | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 1 cut(s) | 330 |
| BstKTI | GATC | 1 cut(s) | 164 |
| BstMAI | GTCTC | 2 cut(s) | 214, 319 |
| BstMBI | GATC | 1 cut(s) | 161 |
| BstNSI | RCATGY | 1 cut(s) | 140 |
| BstX2I | RGATCY | 1 cut(s) | 161 |
| BstYI | RGATCY | 1 cut(s) | 161 |
| Cfr13I | GGNCC | 1 cut(s) | 91 |
| CviAII | CATG | 2 cut(s) | 137, 183 |
| CviJI | RGCY | 1 cut(s) | 281 |
| CviKI_1 | RGCY | 1 cut(s) | 281 |
| DpnI | GATC | 1 cut(s) | 163 |
| DpnII | GATC | 1 cut(s) | 161 |
| Eco47I | GGWCC | 1 cut(s) | 91 |
| EcoT22I | ATGCAT | 1 cut(s) | 188 |
| FaeI | CATG | 2 cut(s) | 140, 186 |
| FaiI | YATR | 9 cut(s) | 122, 124, 126, 138, 143, 184, 276, 304, 321 |
| FatI | CATG | 2 cut(s) | 136, 182 |
| HapII | CCGG | 1 cut(s) | 266 |
| Hin1II | CATG | 2 cut(s) | 140, 186 |
| HinfI | GANTC | 1 cut(s) | 230 |
| HpaII | CCGG | 1 cut(s) | 266 |
| HphI | GGTGA | 1 cut(s) | 204 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy188III | TCNNGA | 1 cut(s) | 266 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| HpyCH4III | ACNGT | 1 cut(s) | 330 |
| HpyCH4V | TGCA | 5 cut(s) | 100, 120, 134, 186, 197 |
| Hsp92II | CATG | 2 cut(s) | 140, 186 |
| Kpn2I | TCCGGA | 1 cut(s) | 265 |
| Kzo9I | GATC | 1 cut(s) | 161 |
| LpnPI | CCDG | 3 cut(s) | 191, 228, 279 |
| LweI | GCATC | 1 cut(s) | 195 |
| MaeIII | GTNAC | 1 cut(s) | 144 |
| MalI | GATC | 1 cut(s) | 163 |
| MboI | GATC | 1 cut(s) | 161 |
| MboII | GAAGA | 1 cut(s) | 54 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MflI | RGATCY | 1 cut(s) | 161 |
| MluCI | AATT | 5 cut(s) | 12, 25, 39, 156, 293 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| MnlI | CCTC | 1 cut(s) | 292 |
| Mph1103I | ATGCAT | 1 cut(s) | 188 |
| MroI | TCCGGA | 1 cut(s) | 265 |
| MseI | TTAA | 4 cut(s) | 11, 38, 113, 155 |
| MspI | CCGG | 1 cut(s) | 266 |
| MunI | CAATTG | 1 cut(s) | 25 |
| Mva1269I | GAATGC | 1 cut(s) | 251 |
| NdeII | GATC | 1 cut(s) | 161 |
| NlaIII | CATG | 2 cut(s) | 140, 186 |
| NsiI | ATGCAT | 1 cut(s) | 188 |
| NspI | RCATGY | 1 cut(s) | 140 |
| PciI | ACATGT | 1 cut(s) | 136 |
| PctI | GAATGC | 1 cut(s) | 251 |
| PflFI | GACNNNGTC | 1 cut(s) | 206 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| PscI | ACATGT | 1 cut(s) | 136 |
| PsiI | TTATAA | 1 cut(s) | 321 |
| PspPI | GGNCC | 1 cut(s) | 91 |
| PsuI | RGATCY | 1 cut(s) | 161 |
| PsyI | GACNNNGTC | 1 cut(s) | 206 |
| SaqAI | TTAA | 4 cut(s) | 11, 38, 113, 155 |
| Sau3AI | GATC | 1 cut(s) | 161 |
| Sau96I | GGNCC | 1 cut(s) | 91 |
| SchI | GAGTC | 1 cut(s) | 239 |
| SetI | ASST | 3 cut(s) | 96, 217, 303 |
| SfaNI | GCATC | 1 cut(s) | 195 |
| SgeI | CNNG | 8 cut(s) | 129, 149, 190, 195, 227, 241, 253, 278 |
| SinI | GGWCC | 1 cut(s) | 91 |
| Sse9I | AATT | 5 cut(s) | 12, 25, 39, 156, 293 |
| SsiI | CCGC | 2 cut(s) | 256, 287 |
| TaaI | ACNGT | 1 cut(s) | 330 |
| TasI | AATT | 5 cut(s) | 12, 25, 39, 156, 293 |
| Tru1I | TTAA | 4 cut(s) | 11, 38, 113, 155 |
| Tru9I | TTAA | 4 cut(s) | 11, 38, 113, 155 |
| TspDTI | ATGAA | 3 cut(s) | 54, 71, 160 |
| Tth111I | GACNNNGTC | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 91 |
| XceI | RCATGY | 1 cut(s) | 140 |
| Zsp2I | ATGCAT | 1 cut(s) | 188 |