Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000650.1

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Reverse (-)

66197 .. 67331

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000650.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgttgatctggtgcctgattccaaattctaacaagactgataaggcttcaatgctggatgaagcagttgagtatttgaagcagctccagcttcaagtacagaggggagaaaggaagaaacagaagaagggggagacgggaaggacagaagaggcagggaaatccaaaagacgagaagaactgctctacttcacagattcaaggatatgtctgctggaacaaggaacaactttgaaaaccagttttgggccaacagccaagatagtggcagcatccattcattttatgatgtcagtgctaatccacttgacaaacaagtatcaatatcaaaatctgacaagaggaggcgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

117

Amino Acids

13.4

Weight (kDa)

9.45

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	25
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	51, 79, 95, 201, 235
AluBI	AGCT	2 cut(s)	85, 91
AluI	AGCT	2 cut(s)	85, 91
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	82, 269
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	94, 281
BcoDI	GTCTC	1 cut(s)	128
BisI	GCNGC	2 cut(s)	83, 270
BlsI	GCNGC	2 cut(s)	84, 271
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	14
BmsI	GCATC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	64, 272
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	94, 281
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	240
BssMI	GATC	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	64, 272
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	94, 281
BstXI	CCANNNNNNTGG	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	64, 272
BtsIMutI	CAGTG	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	98
CviJI	RGCY	5 cut(s)	47, 85, 91, 250, 257
CviKI_1	RGCY	5 cut(s)	47, 85, 91, 250, 257
CviQI	GTAC	1 cut(s)	98
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	128
FaiI	YATR	2 cut(s)	208, 287
Fnu4HI	GCNGC	2 cut(s)	83, 270
FokI	GGATG	2 cut(s)	71, 259
Fsp4HI	GCNGC	2 cut(s)	83, 270
GluI	GCNGC	2 cut(s)	83, 270
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	19, 197
Hpy188I	TCNGA	1 cut(s)	336
HpyAV	CCTTC	2 cut(s)	121, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	29, 41, 101, 141, 200, 253
Lsp1109I	GCAGC	2 cut(s)	94, 281
LweI	GCATC	1 cut(s)	281
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	4 cut(s)	127, 136, 161, 188
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	4 cut(s)	96, 145, 335, 338
MseI	TTAA	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	6
NlaIV	GGNNCC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	19, 197
PkrI	GCNGC	2 cut(s)	84, 271
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	2 cut(s)	83, 270
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	248
SetI	ASST	2 cut(s)	87, 93
SfaNI	GCATC	1 cut(s)	281
Sse9I	AATT	1 cut(s)	25
TasI	AATT	1 cut(s)	25
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	19, 197
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	2 cut(s)	82, 269
TspDTI	ATGAA	2 cut(s)	75, 269
TspRI	CASTG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.