lysine-specific demethylase
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g17910 pycom07g08170 |
| rosa_chinensis | RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301 |
| rosa_laevigata | RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781 |
| rosa_multiflora | Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250 |
| rosa_rugosa | Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200 |
| rosa_samantha | Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700 |
| rosa_wichuraiana | Rw1G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 283, 398 |
| AclWI | GGATC | 1 cut(s) | 183 |
| AfaI | GTAC | 1 cut(s) | 372 |
| AfeI | AGCGCT | 1 cut(s) | 260 |
| AflIII | ACRYGT | 1 cut(s) | 163 |
| AgsI | TTSAA | 1 cut(s) | 52 |
| Alw21I | GWGCWC | 1 cut(s) | 397 |
| Alw26I | GTCTC | 1 cut(s) | 241 |
| AlwI | GGATC | 1 cut(s) | 183 |
| Aor51HI | AGCGCT | 1 cut(s) | 260 |
| AspLEI | GCGC | 1 cut(s) | 261 |
| AsuHPI | GGTGA | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 1 cut(s) | 397 |
| BcoDI | GTCTC | 1 cut(s) | 241 |
| BfoI | RGCGCY | 1 cut(s) | 262 |
| BmsI | GCATC | 1 cut(s) | 222 |
| Bse1I | ACTGG | 1 cut(s) | 205 |
| Bse3DI | GCAATG | 3 cut(s) | 134, 231, 357 |
| BseGI | GGATG | 1 cut(s) | 124 |
| BseMI | GCAATG | 3 cut(s) | 134, 231, 357 |
| BseNI | ACTGG | 1 cut(s) | 205 |
| BsgI | GTGCAG | 1 cut(s) | 144 |
| BsiHKAI | GWGCWC | 1 cut(s) | 397 |
| BsmAI | GTCTC | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 1 cut(s) | 397 |
| Bsp143I | GATC | 1 cut(s) | 188 |
| BspACI | CCGC | 2 cut(s) | 283, 398 |
| BspPI | GGATC | 1 cut(s) | 183 |
| BsrDI | GCAATG | 3 cut(s) | 134, 231, 357 |
| BsrI | ACTGG | 1 cut(s) | 205 |
| BssMI | GATC | 1 cut(s) | 188 |
| BstC8I | GCNNGC | 1 cut(s) | 257 |
| BstDEI | CTNAG | 1 cut(s) | 432 |
| BstF5I | GGATG | 1 cut(s) | 124 |
| BstH2I | RGCGCY | 1 cut(s) | 262 |
| BstHHI | GCGC | 1 cut(s) | 261 |
| BstKTI | GATC | 1 cut(s) | 191 |
| BstMAI | GTCTC | 1 cut(s) | 241 |
| BstMBI | GATC | 1 cut(s) | 188 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstX2I | RGATCY | 1 cut(s) | 188 |
| BstYI | RGATCY | 1 cut(s) | 188 |
| BtsCI | GGATG | 1 cut(s) | 124 |
| BtsI | GCAGTG | 1 cut(s) | 287 |
| BtsIMutI | CAGTG | 1 cut(s) | 287 |
| Cac8I | GCNNGC | 1 cut(s) | 257 |
| CfoI | GCGC | 1 cut(s) | 261 |
| Csp6I | GTAC | 1 cut(s) | 371 |
| CviAII | CATG | 3 cut(s) | 164, 210, 389 |
| CviJI | RGCY | 2 cut(s) | 5, 308 |
| CviKI_1 | RGCY | 2 cut(s) | 5, 308 |
| CviQI | GTAC | 1 cut(s) | 371 |
| DdeI | CTNAG | 1 cut(s) | 432 |
| DpnI | GATC | 1 cut(s) | 190 |
| DpnII | GATC | 1 cut(s) | 188 |
| Eco47III | AGCGCT | 1 cut(s) | 260 |
| EcoT22I | ATGCAT | 2 cut(s) | 215, 359 |
| FaeI | CATG | 3 cut(s) | 167, 213, 392 |
| FatI | CATG | 3 cut(s) | 163, 209, 388 |
| FokI | GGATG | 1 cut(s) | 131 |
| GlaI | GCGC | 1 cut(s) | 260 |
| HaeII | RGCGCY | 1 cut(s) | 262 |
| HhaI | GCGC | 1 cut(s) | 261 |
| Hin1II | CATG | 3 cut(s) | 167, 213, 392 |
| Hin6I | GCGC | 1 cut(s) | 259 |
| HinP1I | GCGC | 1 cut(s) | 259 |
| HphI | GGTGA | 1 cut(s) | 231 |
| Hpy188I | TCNGA | 1 cut(s) | 351 |
| HpyAV | CCTTC | 1 cut(s) | 399 |
| HpyCH4V | TGCA | 7 cut(s) | 21, 127, 147, 161, 213, 224, 357 |
| HpyF3I | CTNAG | 1 cut(s) | 432 |
| Hsp92II | CATG | 3 cut(s) | 167, 213, 392 |
| HspAI | GCGC | 1 cut(s) | 259 |
| Kzo9I | GATC | 1 cut(s) | 188 |
| LmnI | GCTCC | 1 cut(s) | 400 |
| LpnPI | CCDG | 5 cut(s) | 218, 255, 306, 376, 386 |
| LweI | GCATC | 1 cut(s) | 222 |
| MaeIII | GTNAC | 1 cut(s) | 171 |
| MalI | GATC | 1 cut(s) | 190 |
| MboI | GATC | 1 cut(s) | 188 |
| MboII | GAAGA | 1 cut(s) | 81 |
| MfeI | CAATTG | 1 cut(s) | 52 |
| MflI | RGATCY | 1 cut(s) | 188 |
| MhlI | GDGCHC | 1 cut(s) | 397 |
| MluCI | AATT | 7 cut(s) | 52, 66, 183, 219, 320, 329, 380 |
| MnlI | CCTC | 2 cut(s) | 307, 319 |
| Mph1103I | ATGCAT | 2 cut(s) | 215, 359 |
| MseI | TTAA | 4 cut(s) | 65, 140, 182, 383 |
| MunI | CAATTG | 1 cut(s) | 52 |
| NdeII | GATC | 1 cut(s) | 188 |
| NlaIII | CATG | 3 cut(s) | 167, 213, 392 |
| NsiI | ATGCAT | 2 cut(s) | 215, 359 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PciI | ACATGT | 1 cut(s) | 163 |
| PflFI | GACNNNGTC | 1 cut(s) | 233 |
| PscI | ACATGT | 1 cut(s) | 163 |
| PsuI | RGATCY | 1 cut(s) | 188 |
| PsyI | GACNNNGTC | 1 cut(s) | 233 |
| RsaI | GTAC | 1 cut(s) | 372 |
| RsaNI | GTAC | 1 cut(s) | 371 |
| SaqAI | TTAA | 4 cut(s) | 65, 140, 182, 383 |
| Sau3AI | GATC | 1 cut(s) | 188 |
| SduI | GDGCHC | 1 cut(s) | 397 |
| SetI | ASST | 1 cut(s) | 244 |
| SfaNI | GCATC | 1 cut(s) | 222 |
| Sse9I | AATT | 7 cut(s) | 52, 66, 183, 219, 320, 329, 380 |
| SsiI | CCGC | 2 cut(s) | 283, 398 |
| TasI | AATT | 7 cut(s) | 52, 66, 183, 219, 320, 329, 380 |
| Tru1I | TTAA | 4 cut(s) | 65, 140, 182, 383 |
| Tru9I | TTAA | 4 cut(s) | 65, 140, 182, 383 |
| TscAI | CASTG | 1 cut(s) | 294 |
| TspDTI | ATGAA | 3 cut(s) | 81, 98, 187 |
| TspRI | CASTG | 1 cut(s) | 294 |
| Tth111I | GACNNNGTC | 1 cut(s) | 233 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 386 |
| Zsp2I | ATGCAT | 2 cut(s) | 215, 359 |