lysine-specific demethylase
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g17910 pycom07g08170 |
| rosa_chinensis | RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301 |
| rosa_laevigata | RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781 |
| rosa_multiflora | Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250 |
| rosa_rugosa | Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200 |
| rosa_samantha | Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700 |
| rosa_wichuraiana | Rw1G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1047 |
| AccIII | TCCGGA | 3 cut(s) | 641, 959, 1073 |
| AciI | CCGC | 3 cut(s) | 343, 530, 1742 |
| AclWI | GGATC | 4 cut(s) | 876, 889, 1240, 1761 |
| AcoI | YGGCCR | 1 cut(s) | 1136 |
| AcsI | RAATTY | 3 cut(s) | 233, 290, 1625 |
| AcuI | CTGAAG | 3 cut(s) | 57, 1413, 1467 |
| AfaI | GTAC | 1 cut(s) | 52 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 488, 536, 1733 |
| AjiI | CACGTC | 1 cut(s) | 1465 |
| AjnI | CCWGG | 1 cut(s) | 82 |
| AluBI | AGCT | 7 cut(s) | 202, 470, 514, 1112, 1309, 1648, 1661 |
| AluI | AGCT | 7 cut(s) | 202, 470, 514, 1112, 1309, 1648, 1661 |
| Alw21I | GWGCWC | 2 cut(s) | 945, 1018 |
| Alw26I | GTCTC | 4 cut(s) | 301, 442, 1513, 1722 |
| Alw44I | GTGCAC | 2 cut(s) | 941, 1014 |
| AlwI | GGATC | 4 cut(s) | 876, 889, 1240, 1761 |
| Aor13HI | TCCGGA | 3 cut(s) | 641, 959, 1073 |
| AoxI | GGCC | 4 cut(s) | 527, 873, 1136, 1224 |
| ApaLI | GTGCAC | 2 cut(s) | 941, 1014 |
| ApeKI | GCWGC | 8 cut(s) | 262, 265, 577, 799, 892, 1009, 1123, 1243 |
| ApoI | RAATTY | 3 cut(s) | 233, 290, 1625 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 192 |
| AspLEI | GCGC | 2 cut(s) | 1048, 1572 |
| AspS9I | GGNCC | 3 cut(s) | 558, 874, 1225 |
| AsuHPI | GGTGA | 8 cut(s) | 125, 291, 326, 556, 872, 1223, 1555, 1716 |
| AvaII | GGWCC | 1 cut(s) | 558 |
| BaeGI | GKGCMC | 3 cut(s) | 593, 945, 1018 |
| BamHI | GGATCC | 1 cut(s) | 881 |
| BauI | CACGAG | 2 cut(s) | 944, 1503 |
| BbsI | GAAGAC | 2 cut(s) | 798, 1458 |
| Bbv12I | GWGCWC | 2 cut(s) | 945, 1018 |
| BbvI | GCAGC | 8 cut(s) | 274, 277, 589, 811, 904, 1021, 1135, 1255 |
| BccI | CCATC | 3 cut(s) | 423, 1181, 1717 |
| BceAI | ACGGC | 1 cut(s) | 1151 |
| BciT130I | CCWGG | 1 cut(s) | 84 |
| BciVI | GTATCC | 1 cut(s) | 430 |
| BcoDI | GTCTC | 4 cut(s) | 301, 442, 1513, 1722 |
| BfaI | CTAG | 3 cut(s) | 102, 1310, 1512 |
| BfuI | GTATCC | 1 cut(s) | 430 |
| BisI | GCNGC | 9 cut(s) | 263, 266, 530, 578, 800, 893, 1010, 1124, 1244 |
| BlsI | GCNGC | 9 cut(s) | 264, 267, 531, 579, 801, 894, 1011, 1125, 1245 |
| Bme1390I | CCNGG | 1 cut(s) | 84 |
| Bme18I | GGWCC | 1 cut(s) | 558 |
| BmgBI | CACGTC | 1 cut(s) | 1465 |
| BmgT120I | GGNCC | 3 cut(s) | 558, 874, 1225 |
| BmiI | GGNNCC | 2 cut(s) | 133, 883 |
| BmrFI | CCNGG | 1 cut(s) | 84 |
| BmsI | GCATC | 1 cut(s) | 920 |
| BpiI | GAAGAC | 2 cut(s) | 798, 1458 |
| BpmI | CTGGAG | 1 cut(s) | 200 |
| Bpu10I | CCTNAGC | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 4 cut(s) | 54, 877, 885, 1228 |
| BsaWI | WCCGGW | 3 cut(s) | 641, 959, 1073 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 788, 818 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 488, 536, 1733 |
| Bse118I | RCCGGY | 1 cut(s) | 1772 |
| Bse1I | ACTGG | 1 cut(s) | 257 |
| BseAI | TCCGGA | 3 cut(s) | 641, 959, 1073 |
| BseBI | CCWGG | 1 cut(s) | 84 |
| BseDI | CCNNGG | 4 cut(s) | 54, 877, 885, 1228 |
| BseGI | GGATG | 3 cut(s) | 1408, 1684, 1701 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 488, 536, 1733 |
| BseMII | CTCAG | 3 cut(s) | 1227, 1557, 1733 |
| BseNI | ACTGG | 1 cut(s) | 257 |
| BseRI | GAGGAG | 8 cut(s) | 514, 587, 683, 701, 902, 1019, 1115, 1253 |
| BseSI | GKGCMC | 3 cut(s) | 593, 945, 1018 |
| BseXI | GCAGC | 8 cut(s) | 274, 277, 589, 811, 904, 1021, 1135, 1255 |
| BsgI | GTGCAG | 3 cut(s) | 281, 894, 1245 |
| BshFI | GGCC | 4 cut(s) | 529, 875, 1138, 1226 |
| BsiHKAI | GWGCWC | 2 cut(s) | 945, 1018 |
| BsiSI | CCGG | 5 cut(s) | 181, 642, 960, 1074, 1773 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 488, 536, 1733 |
| BsmAI | GTCTC | 4 cut(s) | 301, 442, 1513, 1722 |
| BsmI | GAATGC | 1 cut(s) | 406 |
| BsnI | GGCC | 4 cut(s) | 529, 875, 1138, 1226 |
| Bsp1286I | GDGCHC | 3 cut(s) | 593, 945, 1018 |
| Bsp13I | TCCGGA | 3 cut(s) | 641, 959, 1073 |
| Bsp143I | GATC | 3 cut(s) | 881, 1232, 1766 |
| Bsp19I | CCATGG | 1 cut(s) | 877 |
| BspACI | CCGC | 3 cut(s) | 343, 530, 1742 |
| BspANI | GGCC | 4 cut(s) | 529, 875, 1138, 1226 |
| BspCNI | CTCAG | 3 cut(s) | 1228, 1558, 1732 |
| BspEI | TCCGGA | 3 cut(s) | 641, 959, 1073 |
| BspLI | GGNNCC | 2 cut(s) | 133, 883 |
| BspPI | GGATC | 4 cut(s) | 876, 889, 1240, 1761 |
| BsrFI | RCCGGY | 1 cut(s) | 1772 |
| BsrI | ACTGG | 1 cut(s) | 257 |
| BssAI | RCCGGY | 1 cut(s) | 1772 |
| BssECI | CCNNGG | 4 cut(s) | 54, 877, 885, 1228 |
| BssMI | GATC | 3 cut(s) | 881, 1232, 1766 |
| BssSI | CACGAG | 2 cut(s) | 944, 1503 |
| BssT1I | CCWWGG | 2 cut(s) | 877, 1228 |
| Bst2BI | CACGAG | 2 cut(s) | 944, 1503 |
| Bst2UI | CCWGG | 1 cut(s) | 84 |
| Bst4CI | ACNGT | 5 cut(s) | 55, 588, 1273, 1389, 1443 |
| Bst6I | CTCTTC | 5 cut(s) | 491, 864, 1215, 1347, 1392 |
| BstC8I | GCNNGC | 5 cut(s) | 729, 847, 1014, 1050, 1171 |
| BstDEI | CTNAG | 4 cut(s) | 198, 1236, 1566, 1719 |
| BstDSI | CCRYGG | 2 cut(s) | 54, 877 |
| BstF5I | GGATG | 3 cut(s) | 1408, 1684, 1701 |
| BstHHI | GCGC | 2 cut(s) | 1048, 1572 |
| BstKTI | GATC | 3 cut(s) | 884, 1235, 1769 |
| BstMAI | GTCTC | 4 cut(s) | 301, 442, 1513, 1722 |
| BstMBI | GATC | 3 cut(s) | 881, 1232, 1766 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 697, 1018 |
| BstNI | CCWGG | 1 cut(s) | 84 |
| BstNSI | RCATGY | 6 cut(s) | 731, 845, 849, 1052, 1173, 1298 |
| BstSCI | CCNGG | 1 cut(s) | 82 |
| BstSLI | GKGCMC | 3 cut(s) | 593, 945, 1018 |
| BstV1I | GCAGC | 8 cut(s) | 274, 277, 589, 811, 904, 1021, 1135, 1255 |
| BstV2I | GAAGAC | 2 cut(s) | 798, 1458 |
| BstX2I | RGATCY | 3 cut(s) | 881, 1232, 1766 |
| BstYI | RGATCY | 3 cut(s) | 881, 1232, 1766 |
| BsuI | GTATCC | 1 cut(s) | 430 |
| BsuRI | GGCC | 4 cut(s) | 529, 875, 1138, 1226 |
| BtgI | CCRYGG | 2 cut(s) | 54, 877 |
| BtrI | CACGTC | 1 cut(s) | 1465 |
| BtsCI | GGATG | 3 cut(s) | 1408, 1684, 1701 |
| BtsI | GCAGTG | 4 cut(s) | 223, 695, 911, 1016 |
| BtsIMutI | CAGTG | 8 cut(s) | 223, 264, 584, 695, 911, 1016, 1269, 1563 |
| Cac8I | GCNNGC | 5 cut(s) | 729, 847, 1014, 1050, 1171 |
| CfoI | GCGC | 2 cut(s) | 1048, 1572 |
| Cfr10I | RCCGGY | 1 cut(s) | 1772 |
| Cfr13I | GGNCC | 3 cut(s) | 558, 874, 1225 |
| Csp6I | GTAC | 1 cut(s) | 51 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1695, 1730 |
| CviQI | GTAC | 1 cut(s) | 51 |
| DdeI | CTNAG | 4 cut(s) | 198, 1236, 1566, 1719 |
| DpnI | GATC | 3 cut(s) | 883, 1234, 1768 |
| DpnII | GATC | 3 cut(s) | 881, 1232, 1766 |
| EaeI | YGGCCR | 1 cut(s) | 1136 |
| Eam1104I | CTCTTC | 5 cut(s) | 491, 864, 1215, 1347, 1392 |
| EarI | CTCTTC | 5 cut(s) | 491, 864, 1215, 1347, 1392 |
| EciI | GGCGGA | 1 cut(s) | 1731 |
| Eco130I | CCWWGG | 2 cut(s) | 877, 1228 |
| Eco47I | GGWCC | 1 cut(s) | 558 |
| Eco57I | CTGAAG | 3 cut(s) | 57, 1413, 1467 |
| EcoRI | GAATTC | 2 cut(s) | 233, 1625 |
| EcoRII | CCWGG | 1 cut(s) | 82 |
| EcoT14I | CCWWGG | 2 cut(s) | 877, 1228 |
| EcoT22I | ATGCAT | 6 cut(s) | 275, 733, 847, 935, 1054, 1300 |
| ErhI | CCWWGG | 2 cut(s) | 877, 1228 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 270, 302 |
| Fnu4HI | GCNGC | 9 cut(s) | 263, 266, 530, 578, 800, 893, 1010, 1124, 1244 |
| FokI | GGATG | 3 cut(s) | 1415, 1671, 1688 |
| Fsp4HI | GCNGC | 9 cut(s) | 263, 266, 530, 578, 800, 893, 1010, 1124, 1244 |
| FspAI | RTGCGCAY | 1 cut(s) | 1047 |
| FspBI | CTAG | 3 cut(s) | 102, 1310, 1512 |
| FspI | TGCGCA | 1 cut(s) | 1047 |
| GlaI | GCGC | 2 cut(s) | 1047, 1571 |
| GluI | GCNGC | 9 cut(s) | 263, 266, 530, 578, 800, 893, 1010, 1124, 1244 |
| GsuI | CTGGAG | 1 cut(s) | 200 |
| HaeIII | GGCC | 4 cut(s) | 529, 875, 1138, 1226 |
| HapII | CCGG | 5 cut(s) | 181, 642, 960, 1074, 1773 |
| HhaI | GCGC | 2 cut(s) | 1048, 1572 |
| Hin6I | GCGC | 2 cut(s) | 1046, 1570 |
| HinP1I | GCGC | 2 cut(s) | 1046, 1570 |
| HincII | GTYRAC | 2 cut(s) | 330, 519 |
| HindII | GTYRAC | 2 cut(s) | 330, 519 |
| HpaII | CCGG | 5 cut(s) | 181, 642, 960, 1074, 1773 |
| HphI | GGTGA | 8 cut(s) | 125, 291, 326, 556, 872, 1223, 1555, 1716 |
| Hpy166II | GTNNAC | 7 cut(s) | 330, 519, 584, 695, 943, 1016, 1756 |
| Hpy188I | TCNGA | 8 cut(s) | 127, 142, 886, 1237, 1393, 1447, 1645, 1689 |
| Hpy8I | GTNNAC | 7 cut(s) | 330, 519, 584, 695, 943, 1016, 1756 |
| Hpy99I | CGWCG | 1 cut(s) | 1460 |
| HpyCH4III | ACNGT | 5 cut(s) | 55, 588, 1273, 1389, 1443 |
| HpyCH4IV | ACGT | 2 cut(s) | 30, 1464 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 697, 1018 |
| HpyF3I | CTNAG | 4 cut(s) | 198, 1236, 1566, 1719 |
| HpySE526I | ACGT | 2 cut(s) | 30, 1464 |
| HspAI | GCGC | 2 cut(s) | 1046, 1570 |
| Kpn2I | TCCGGA | 3 cut(s) | 641, 959, 1073 |
| Kzo9I | GATC | 3 cut(s) | 881, 1232, 1766 |
| LmnI | GCTCC | 7 cut(s) | 574, 688, 796, 889, 1006, 1120, 1240 |
| Lsp1109I | GCAGC | 8 cut(s) | 274, 277, 589, 811, 904, 1021, 1135, 1255 |
| LweI | GCATC | 1 cut(s) | 920 |
| MaeI | CTAG | 3 cut(s) | 102, 1310, 1512 |
| MaeII | ACGT | 2 cut(s) | 30, 1464 |
| MaeIII | GTNAC | 5 cut(s) | 26, 74, 1534, 1673, 1722 |
| MalI | GATC | 3 cut(s) | 883, 1234, 1768 |
| MboI | GATC | 3 cut(s) | 881, 1232, 1766 |
| MflI | RGATCY | 3 cut(s) | 881, 1232, 1766 |
| MhlI | GDGCHC | 3 cut(s) | 593, 945, 1018 |
| MluCI | AATT | 9 cut(s) | 233, 290, 380, 774, 834, 996, 1095, 1158, 1625 |
| MlyI | GAGTC | 2 cut(s) | 1364, 1515 |
| MmeI | TCCRAC | 1 cut(s) | 414 |
| Mph1103I | ATGCAT | 6 cut(s) | 275, 733, 847, 935, 1054, 1300 |
| MroI | TCCGGA | 3 cut(s) | 641, 959, 1073 |
| MroXI | GAANNNNTTC | 1 cut(s) | 192 |
| MseI | TTAA | 1 cut(s) | 276 |
| MslI | CAYNNNNRTG | 2 cut(s) | 938, 1521 |
| MspI | CCGG | 5 cut(s) | 181, 642, 960, 1074, 1773 |
| MspR9I | CCNGG | 1 cut(s) | 84 |
| Mva1269I | GAATGC | 1 cut(s) | 406 |
| MvaI | CCWGG | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 697, 1018 |
| NcoI | CCATGG | 1 cut(s) | 877 |
| NdeII | GATC | 3 cut(s) | 881, 1232, 1766 |
| NlaIV | GGNNCC | 2 cut(s) | 133, 883 |
| NmuCI | GTSAC | 1 cut(s) | 1722 |
| NsbI | TGCGCA | 1 cut(s) | 1047 |
| NsiI | ATGCAT | 6 cut(s) | 275, 733, 847, 935, 1054, 1300 |
| NspI | RCATGY | 6 cut(s) | 731, 845, 849, 1052, 1173, 1298 |
| PaeI | GCATGC | 4 cut(s) | 731, 849, 1052, 1173 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1461 |
| PctI | GAATGC | 1 cut(s) | 406 |
| PdmI | GAANNNNTTC | 1 cut(s) | 192 |
| PfeI | GAWTC | 8 cut(s) | 89, 635, 746, 897, 953, 1067, 1248, 1618 |
| PkrI | GCNGC | 9 cut(s) | 264, 267, 531, 579, 801, 894, 1011, 1125, 1245 |
| PleI | GAGTC | 2 cut(s) | 1363, 1514 |
| PpsI | GAGTC | 2 cut(s) | 1363, 1514 |
| Psp6I | CCWGG | 1 cut(s) | 82 |
| PspGI | CCWGG | 1 cut(s) | 82 |
| PspN4I | GGNNCC | 2 cut(s) | 133, 883 |
| PspPI | GGNCC | 3 cut(s) | 558, 874, 1225 |
| PsuI | RGATCY | 3 cut(s) | 881, 1232, 1766 |
| RsaI | GTAC | 1 cut(s) | 52 |
| RsaNI | GTAC | 1 cut(s) | 51 |
| RseI | CAYNNNNRTG | 2 cut(s) | 938, 1521 |
| SaqAI | TTAA | 1 cut(s) | 276 |
| SatI | GCNGC | 9 cut(s) | 263, 266, 530, 578, 800, 893, 1010, 1124, 1244 |
| Sau3AI | GATC | 3 cut(s) | 881, 1232, 1766 |
| Sau96I | GGNCC | 3 cut(s) | 558, 874, 1225 |
| SchI | GAGTC | 2 cut(s) | 1364, 1515 |
| ScrFI | CCNGG | 1 cut(s) | 84 |
| SduI | GDGCHC | 3 cut(s) | 593, 945, 1018 |
| SfaNI | GCATC | 1 cut(s) | 920 |
| SinI | GGWCC | 1 cut(s) | 558 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 938, 1521 |
| SphI | GCATGC | 4 cut(s) | 731, 849, 1052, 1173 |
| Sse9I | AATT | 9 cut(s) | 233, 290, 380, 774, 834, 996, 1095, 1158, 1625 |
| SsiI | CCGC | 3 cut(s) | 343, 530, 1742 |
| SspMI | CTAG | 3 cut(s) | 102, 1310, 1512 |
| StyD4I | CCNGG | 1 cut(s) | 82 |
| StyI | CCWWGG | 2 cut(s) | 877, 1228 |
| TaaI | ACNGT | 5 cut(s) | 55, 588, 1273, 1389, 1443 |
| TaiI | ACGT | 2 cut(s) | 33, 1467 |
| TaqI | TCGA | 2 cut(s) | 509, 1554 |
| TaqII | GACCGA | 1 cut(s) | 347 |
| TasI | AATT | 9 cut(s) | 233, 290, 380, 774, 834, 996, 1095, 1158, 1625 |
| TauI | GCSGC | 1 cut(s) | 532 |
| TfiI | GAWTC | 8 cut(s) | 89, 635, 746, 897, 953, 1067, 1248, 1618 |
| Tru1I | TTAA | 1 cut(s) | 276 |
| Tru9I | TTAA | 1 cut(s) | 276 |
| TscAI | CASTG | 8 cut(s) | 230, 264, 591, 702, 918, 1023, 1276, 1570 |
| TseFI | GTSAC | 1 cut(s) | 1722 |
| TseI | GCWGC | 8 cut(s) | 262, 265, 577, 799, 892, 1009, 1123, 1243 |
| Tsp45I | GTSAC | 1 cut(s) | 1722 |
| TspDTI | ATGAA | 1 cut(s) | 480 |
| TspGWI | ACGGA | 1 cut(s) | 1628 |
| TspRI | CASTG | 8 cut(s) | 230, 264, 591, 702, 918, 1023, 1276, 1570 |
| VneI | GTGCAC | 2 cut(s) | 941, 1014 |
| VpaK11BI | GGWCC | 1 cut(s) | 558 |
| XapI | RAATTY | 3 cut(s) | 233, 290, 1625 |
| XbaI | TCTAGA | 1 cut(s) | 1511 |
| XceI | RCATGY | 6 cut(s) | 731, 845, 849, 1052, 1173, 1298 |
| XmnI | GAANNNNTTC | 1 cut(s) | 192 |
| XspI | CTAG | 3 cut(s) | 102, 1310, 1512 |
| Zsp2I | ATGCAT | 6 cut(s) | 275, 733, 847, 935, 1054, 1300 |