required for autophagy
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g17910 pycom07g08170 |
| rosa_chinensis | RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301 |
| rosa_laevigata | RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781 |
| rosa_multiflora | Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250 |
| rosa_rugosa | Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200 |
| rosa_samantha | Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700 |
| rosa_wichuraiana | Rw1G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 12 |
| AclWI | GGATC | 1 cut(s) | 130 |
| AcsI | RAATTY | 1 cut(s) | 25 |
| AfaI | GTAC | 1 cut(s) | 99 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 146 |
| AgsI | TTSAA | 3 cut(s) | 51, 79, 95 |
| AjnI | CCWGG | 1 cut(s) | 121 |
| AluBI | AGCT | 4 cut(s) | 85, 91, 215, 227 |
| AluI | AGCT | 4 cut(s) | 85, 91, 215, 227 |
| AlwI | GGATC | 1 cut(s) | 130 |
| ApeKI | GCWGC | 2 cut(s) | 82, 227 |
| ApoI | RAATTY | 1 cut(s) | 25 |
| AsuHPI | GGTGA | 1 cut(s) | 161 |
| BanI | GGYRCC | 1 cut(s) | 12 |
| BbvCI | CCTCAGC | 1 cut(s) | 231 |
| BbvI | GCAGC | 2 cut(s) | 94, 214 |
| BciT130I | CCWGG | 1 cut(s) | 123 |
| BisI | GCNGC | 2 cut(s) | 83, 228 |
| BlsI | GCNGC | 2 cut(s) | 84, 229 |
| Bme1390I | CCNGG | 1 cut(s) | 123 |
| BmiI | GGNNCC | 1 cut(s) | 14 |
| BmrFI | CCNGG | 1 cut(s) | 123 |
| BpmI | CTGGAG | 1 cut(s) | 71 |
| Bpu10I | CCTNAGC | 1 cut(s) | 231 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 146 |
| BseBI | CCWGG | 1 cut(s) | 123 |
| BseGI | GGATG | 1 cut(s) | 64 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 146 |
| BseMII | CTCAG | 2 cut(s) | 212, 222 |
| BseXI | GCAGC | 2 cut(s) | 94, 214 |
| BshNI | GGYRCC | 1 cut(s) | 12 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 146 |
| Bsp143I | GATC | 2 cut(s) | 6, 135 |
| BspCNI | CTCAG | 2 cut(s) | 213, 223 |
| BspLI | GGNNCC | 1 cut(s) | 14 |
| BspPI | GGATC | 1 cut(s) | 130 |
| BspT107I | GGYRCC | 1 cut(s) | 12 |
| BssMI | GATC | 2 cut(s) | 6, 135 |
| Bst2UI | CCWGG | 1 cut(s) | 123 |
| BstDEI | CTNAG | 2 cut(s) | 221, 231 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 144 |
| BstF5I | GGATG | 1 cut(s) | 64 |
| BstKTI | GATC | 2 cut(s) | 9, 138 |
| BstMBI | GATC | 2 cut(s) | 6, 135 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 88 |
| BstNI | CCWGG | 1 cut(s) | 123 |
| BstSCI | CCNGG | 1 cut(s) | 121 |
| BstV1I | GCAGC | 2 cut(s) | 94, 214 |
| BtsCI | GGATG | 1 cut(s) | 64 |
| BtsIMutI | CAGTG | 1 cut(s) | 182 |
| Csp6I | GTAC | 1 cut(s) | 98 |
| CviJI | RGCY | 6 cut(s) | 47, 85, 91, 215, 227, 237 |
| CviKI_1 | RGCY | 6 cut(s) | 47, 85, 91, 215, 227, 237 |
| CviQI | GTAC | 1 cut(s) | 98 |
| DdeI | CTNAG | 2 cut(s) | 221, 231 |
| DpnI | GATC | 2 cut(s) | 8, 137 |
| DpnII | GATC | 2 cut(s) | 6, 135 |
| Eco32I | GATATC | 1 cut(s) | 119 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 144 |
| EcoRII | CCWGG | 1 cut(s) | 121 |
| EcoRV | GATATC | 1 cut(s) | 119 |
| FaiI | YATR | 3 cut(s) | 131, 161, 218 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 155, 187 |
| Fnu4HI | GCNGC | 2 cut(s) | 83, 228 |
| FokI | GGATG | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 2 cut(s) | 83, 228 |
| GluI | GCNGC | 2 cut(s) | 83, 228 |
| GsuI | CTGGAG | 1 cut(s) | 71 |
| HapII | CCGG | 1 cut(s) | 16 |
| HinfI | GANTC | 1 cut(s) | 19 |
| HpaII | CCGG | 1 cut(s) | 16 |
| HphI | GGTGA | 1 cut(s) | 161 |
| Hpy188I | TCNGA | 1 cut(s) | 113 |
| HpyAV | CCTTC | 1 cut(s) | 140 |
| HpyCH4V | TGCA | 1 cut(s) | 106 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 88 |
| HpyF3I | CTNAG | 2 cut(s) | 221, 231 |
| Kzo9I | GATC | 2 cut(s) | 6, 135 |
| LmnI | GCTCC | 1 cut(s) | 90 |
| LpnPI | CCDG | 6 cut(s) | 29, 41, 86, 101, 108, 135 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 214 |
| MalI | GATC | 2 cut(s) | 8, 137 |
| MboI | GATC | 2 cut(s) | 6, 135 |
| MboII | GAAGA | 1 cut(s) | 164 |
| MfeI | CAATTG | 1 cut(s) | 66 |
| MluCI | AATT | 2 cut(s) | 25, 66 |
| MnlI | CCTC | 2 cut(s) | 107, 226 |
| MspI | CCGG | 1 cut(s) | 16 |
| MspR9I | CCNGG | 1 cut(s) | 123 |
| MunI | CAATTG | 1 cut(s) | 66 |
| MvaI | CCWGG | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 88 |
| NdeII | GATC | 2 cut(s) | 6, 135 |
| NlaIV | GGNNCC | 1 cut(s) | 14 |
| PfeI | GAWTC | 1 cut(s) | 19 |
| PfoI | TCCNGGA | 1 cut(s) | 121 |
| PkrI | GCNGC | 2 cut(s) | 84, 229 |
| Psp6I | CCWGG | 1 cut(s) | 121 |
| PspGI | CCWGG | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 1 cut(s) | 14 |
| RsaI | GTAC | 1 cut(s) | 99 |
| RsaNI | GTAC | 1 cut(s) | 98 |
| SatI | GCNGC | 2 cut(s) | 83, 228 |
| Sau3AI | GATC | 2 cut(s) | 6, 135 |
| ScrFI | CCNGG | 1 cut(s) | 123 |
| SetI | ASST | 6 cut(s) | 87, 93, 105, 151, 217, 229 |
| Sse9I | AATT | 2 cut(s) | 25, 66 |
| StyD4I | CCNGG | 1 cut(s) | 121 |
| TasI | AATT | 2 cut(s) | 25, 66 |
| TatI | WGTACW | 1 cut(s) | 97 |
| TfiI | GAWTC | 1 cut(s) | 19 |
| TscAI | CASTG | 1 cut(s) | 189 |
| TseI | GCWGC | 2 cut(s) | 82, 227 |
| TspDTI | ATGAA | 1 cut(s) | 75 |
| TspRI | CASTG | 1 cut(s) | 189 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 144 |
| XapI | RAATTY | 1 cut(s) | 25 |