Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Forward (+)

70207151 .. 70218328

Gene Structure 11178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG502700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTGATCTGGTGCCTGATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAAGCAGTTGAGTATTTGAAGCAGCTCCAACTTCAAGTACAGAGGGGAGAAAGGAAGAAACAGAAGAAGGGGGAGACGGGAAGGACAGAAGAGGCAGGGAAATCCAAAAGACGAGAAGAACTGCTCTACTTCACAGATTCAAGCAACACTAACCAGAATCATAGAATTCCTCATTATCTCCAGGATCAGGTTCCCGAAGTGCTCTATTCCAAATCAGAAGAGAAATCCTTCCTGATGATGACTACAAACCAAATCAACCATAAGATGAGACAAAGCAATATAAGCAATCTAATATCAAAGCCAGGCAAGGAATATTACTACATGAATCATAAATGTAATAAACTCGAAGACAATAAGAATTACTTTTCGTTGAAACTTATAAGAGAACTCCACGGCTTTCATTCTCAGACCAAGGTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

160

Amino Acids

18.96

Weight (kDa)

9.41

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	25, 225
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	5 cut(s)	51, 79, 95, 201, 433
AjnI	CCWGG	2 cut(s)	240, 361
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	128, 322
AlwI	GGATC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	2 cut(s)	25, 225
Asp700I	GAANNNNTTC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	242, 363
BcoDI	GTCTC	2 cut(s)	128, 322
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	242, 363
BmiI	GGNNCC	2 cut(s)	14, 252
BmrFI	CCNGG	2 cut(s)	242, 363
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	451, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	242, 363
BseDI	CCNNGG	2 cut(s)	451, 471
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	128, 322
BsmBI	CGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	6, 244
BspCNI	CTCAG	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	14, 252
BspPI	GGATC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	451, 471
BssMI	GATC	2 cut(s)	6, 244
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	242, 363
Bst6I	CTCTTC	2 cut(s)	144, 273
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	9, 247
BstMAI	GTCTC	2 cut(s)	128, 322
BstMBI	GATC	2 cut(s)	6, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	2 cut(s)	242, 363
BstSCI	CCNGG	2 cut(s)	240, 361
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	4 cut(s)	47, 85, 361, 456
CviKI_1	RGCY	4 cut(s)	47, 85, 361, 456
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	8, 246
DpnII	GATC	2 cut(s)	6, 244
Eam1104I	CTCTTC	2 cut(s)	144, 273
EarI	CTCTTC	2 cut(s)	144, 273
Eco130I	CCWWGG	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	240, 361
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	1 cut(s)	385
FaiI	YATR	7 cut(s)	222, 321, 341, 383, 390, 440, 481
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	224
Hin1II	CATG	1 cut(s)	385
HinfI	GANTC	4 cut(s)	19, 197, 217, 385
Hpy188I	TCNGA	2 cut(s)	277, 468
Hpy188III	TCNNGA	2 cut(s)	254, 292
HpyAV	CCTTC	3 cut(s)	121, 135, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	6, 244
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	2 cut(s)	8, 246
MboI	GATC	2 cut(s)	6, 244
MboII	GAAGA	6 cut(s)	127, 136, 161, 188, 290, 419
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	3 cut(s)	25, 225, 418
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	3 cut(s)	96, 145, 240
MroXI	GAANNNNTTC	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	242, 363
MvaI	CCWGG	2 cut(s)	242, 363
MwoI	GCNNNNNNNGC	1 cut(s)	342
NdeII	GATC	2 cut(s)	6, 244
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	14, 252
NmuCI	GTSAC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	4 cut(s)	19, 197, 217, 385
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	240, 361
PspGI	CCWGG	2 cut(s)	240, 361
PspN4I	GGNNCC	2 cut(s)	14, 252
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	2 cut(s)	6, 244
ScrFI	CCNGG	2 cut(s)	242, 363
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	3 cut(s)	87, 252, 477
Sse9I	AATT	3 cut(s)	25, 225, 418
SspI	AATATT	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	240, 361
StyI	CCWWGG	1 cut(s)	471
TaqI	TCGA	1 cut(s)	405
TasI	AATT	3 cut(s)	25, 225, 418
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	4 cut(s)	19, 197, 217, 385
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	75, 398, 449
XapI	RAATTY	2 cut(s)	25, 225
XmnI	GAANNNNTTC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.