Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Reverse (-)

43758805 .. 43768283

Gene Structure 9479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG227600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAAAACGTCAATAAACGACTGTGCATTAAGAATGTCATGCATCAAAGTTGCAATGGACTTTGTCTCACCTGAAAATATCGGCGAGTCCTTTCACTTGACAGAAGCATTCCGCACACTTCCGGAAAATCATAGGGCTAAAGCGGACAAATTGGAGGTTTTGGGATTTGGTTTGTTCATACCTAAGAAGATAAACAAACTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

68

Amino Acids

7.65

Weight (kDa)

8.71

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	2 cut(s)	112, 143
Alw26I	GTCTC	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	70
BmsI	GCATC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	121
BspACI	CCGC	2 cut(s)	112, 143
BspEI	TCCGGA	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	70
CciI	TCATGA	1 cut(s)	203
CviAII	CATG	2 cut(s)	39, 204
CviJI	RGCY	1 cut(s)	137
CviKI_1	RGCY	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	44
FaeI	CATG	2 cut(s)	42, 207
FaiI	YATR	4 cut(s)	40, 132, 179, 205
FatI	CATG	2 cut(s)	38, 203
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	2 cut(s)	42, 207
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	60
Hpy188III	TCNNGA	2 cut(s)	122, 204
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	26, 42, 53
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	42, 207
Kpn2I	TCCGGA	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	84, 135
LweI	GCATC	1 cut(s)	51
MaeII	ACGT	1 cut(s)	8
MboII	GAAGA	1 cut(s)	199
MluCI	AATT	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	1 cut(s)	148
Mph1103I	ATGCAT	1 cut(s)	44
MroI	TCCGGA	1 cut(s)	121
MseI	TTAA	1 cut(s)	29
MspI	CCGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	42, 207
NsiI	ATGCAT	1 cut(s)	44
PagI	TCATGA	1 cut(s)	203
PctI	GAATGC	1 cut(s)	107
PflFI	GACNNNGTC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PsyI	GACNNNGTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	29
SchI	GAGTC	1 cut(s)	95
SetI	ASST	4 cut(s)	11, 73, 159, 184
SfaNI	GCATC	1 cut(s)	51
SgeI	CNNG	5 cut(s)	51, 83, 97, 109, 134
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	112, 143
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	1 cut(s)	11
TasI	AATT	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	17, 166
Tth111I	GACNNNGTC	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.