lysine-specific demethylase
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g17910 pycom07g08170 |
| rosa_chinensis | RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301 |
| rosa_laevigata | RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781 |
| rosa_multiflora | Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250 |
| rosa_rugosa | Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200 |
| rosa_samantha | Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700 |
| rosa_wichuraiana | Rw1G007110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 157 |
| AcsI | RAATTY | 1 cut(s) | 329 |
| AfaI | GTAC | 1 cut(s) | 247 |
| AflIII | ACRYGT | 1 cut(s) | 37 |
| AgsI | TTSAA | 1 cut(s) | 329 |
| Alw21I | GWGCWC | 1 cut(s) | 272 |
| Alw26I | GTCTC | 1 cut(s) | 115 |
| ApoI | RAATTY | 1 cut(s) | 329 |
| AsuHPI | GGTGA | 1 cut(s) | 105 |
| AxyI | CCTNAGG | 1 cut(s) | 274 |
| Bbv12I | GWGCWC | 1 cut(s) | 272 |
| BcoDI | GTCTC | 1 cut(s) | 115 |
| BmrI | ACTGGG | 1 cut(s) | 215 |
| BmsI | GCATC | 1 cut(s) | 96 |
| BmuI | ACTGGG | 1 cut(s) | 215 |
| Bse1I | ACTGG | 2 cut(s) | 79, 210 |
| Bse21I | CCTNAGG | 1 cut(s) | 274 |
| Bse3DI | GCAATG | 2 cut(s) | 16, 105 |
| BseMI | GCAATG | 2 cut(s) | 16, 105 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseNI | ACTGG | 2 cut(s) | 79, 210 |
| BseRI | GAGGAG | 1 cut(s) | 262 |
| BsgI | GTGCAG | 1 cut(s) | 18 |
| BsiHKAI | GWGCWC | 1 cut(s) | 272 |
| BsmAI | GTCTC | 1 cut(s) | 115 |
| Bsp1286I | GDGCHC | 1 cut(s) | 272 |
| Bsp143I | GATC | 1 cut(s) | 62 |
| BspACI | CCGC | 1 cut(s) | 157 |
| BspCNI | CTCAG | 1 cut(s) | 287 |
| BsrDI | GCAATG | 2 cut(s) | 16, 105 |
| BsrI | ACTGG | 2 cut(s) | 79, 210 |
| BssMI | GATC | 1 cut(s) | 62 |
| Bst6I | CTCTTC | 1 cut(s) | 310 |
| BstDEI | CTNAG | 1 cut(s) | 274 |
| BstKTI | GATC | 1 cut(s) | 65 |
| BstMAI | GTCTC | 1 cut(s) | 115 |
| BstMBI | GATC | 1 cut(s) | 62 |
| BstNSI | RCATGY | 1 cut(s) | 41 |
| Bsu36I | CCTNAGG | 1 cut(s) | 274 |
| Csp6I | GTAC | 1 cut(s) | 246 |
| CviAII | CATG | 4 cut(s) | 38, 84, 264, 311 |
| CviJI | RGCY | 2 cut(s) | 182, 238 |
| CviKI_1 | RGCY | 2 cut(s) | 182, 238 |
| CviQI | GTAC | 1 cut(s) | 246 |
| DdeI | CTNAG | 1 cut(s) | 274 |
| DpnI | GATC | 1 cut(s) | 64 |
| DpnII | GATC | 1 cut(s) | 62 |
| Eam1104I | CTCTTC | 1 cut(s) | 310 |
| EarI | CTCTTC | 1 cut(s) | 310 |
| Eco81I | CCTNAGG | 1 cut(s) | 274 |
| EcoT22I | ATGCAT | 1 cut(s) | 89 |
| FaeI | CATG | 4 cut(s) | 41, 87, 267, 314 |
| FaiI | YATR | 9 cut(s) | 23, 25, 27, 39, 44, 85, 177, 265, 312 |
| FatI | CATG | 4 cut(s) | 37, 83, 263, 310 |
| Hin1II | CATG | 4 cut(s) | 41, 87, 267, 314 |
| HinfI | GANTC | 1 cut(s) | 241 |
| HphI | GGTGA | 1 cut(s) | 105 |
| Hpy188I | TCNGA | 1 cut(s) | 225 |
| Hpy188III | TCNNGA | 1 cut(s) | 167 |
| HpyAV | CCTTC | 1 cut(s) | 274 |
| HpyCH4V | TGCA | 5 cut(s) | 9, 21, 35, 87, 98 |
| HpyF3I | CTNAG | 1 cut(s) | 274 |
| Hsp92II | CATG | 4 cut(s) | 41, 87, 267, 314 |
| Kzo9I | GATC | 1 cut(s) | 62 |
| LmnI | GCTCC | 1 cut(s) | 275 |
| LpnPI | CCDG | 5 cut(s) | 92, 129, 180, 191, 261 |
| LweI | GCATC | 1 cut(s) | 96 |
| MaeIII | GTNAC | 1 cut(s) | 45 |
| MalI | GATC | 1 cut(s) | 64 |
| MboI | GATC | 1 cut(s) | 62 |
| MboII | GAAGA | 1 cut(s) | 327 |
| MhlI | GDGCHC | 1 cut(s) | 272 |
| MluCI | AATT | 5 cut(s) | 57, 93, 194, 255, 329 |
| MnlI | CCTC | 3 cut(s) | 181, 193, 283 |
| Mph1103I | ATGCAT | 1 cut(s) | 89 |
| MseI | TTAA | 3 cut(s) | 56, 258, 334 |
| MslI | CAYNNNNRTG | 1 cut(s) | 309 |
| NdeII | GATC | 1 cut(s) | 62 |
| NlaIII | CATG | 4 cut(s) | 41, 87, 267, 314 |
| NsiI | ATGCAT | 1 cut(s) | 89 |
| NspI | RCATGY | 1 cut(s) | 41 |
| PciI | ACATGT | 1 cut(s) | 37 |
| PfeI | GAWTC | 1 cut(s) | 241 |
| PflFI | GACNNNGTC | 1 cut(s) | 107 |
| PscI | ACATGT | 1 cut(s) | 37 |
| PsyI | GACNNNGTC | 1 cut(s) | 107 |
| RsaI | GTAC | 1 cut(s) | 247 |
| RsaNI | GTAC | 1 cut(s) | 246 |
| RseI | CAYNNNNRTG | 1 cut(s) | 309 |
| SaqAI | TTAA | 3 cut(s) | 56, 258, 334 |
| Sau3AI | GATC | 1 cut(s) | 62 |
| SduI | GDGCHC | 1 cut(s) | 272 |
| SetI | ASST | 1 cut(s) | 118 |
| SfaNI | GCATC | 1 cut(s) | 96 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 309 |
| Sse9I | AATT | 5 cut(s) | 57, 93, 194, 255, 329 |
| SsiI | CCGC | 1 cut(s) | 157 |
| TasI | AATT | 5 cut(s) | 57, 93, 194, 255, 329 |
| TfiI | GAWTC | 1 cut(s) | 241 |
| Tru1I | TTAA | 3 cut(s) | 56, 258, 334 |
| Tru9I | TTAA | 3 cut(s) | 56, 258, 334 |
| TspDTI | ATGAA | 1 cut(s) | 61 |
| Tth111I | GACNNNGTC | 1 cut(s) | 107 |
| XapI | RAATTY | 1 cut(s) | 329 |
| XceI | RCATGY | 1 cut(s) | 41 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 261 |
| Zsp2I | ATGCAT | 1 cut(s) | 89 |