Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Forward (+)

66855004 .. 66856584

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG386600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTGATCTGGTGCCTGATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAAGCAGTTGAGTATTTGAAGCAGCTCCAGCTTCAAGTACAGAGGGGAGAAAGGAAGAAACAGAAGAAGGGGGAGACGGGAACGACAGAAGAGGCAGGGAAATCCAAAAGACGAGAAGAACTGCTCTACTTCACAGATTCAAGTAAGCTTCTGAGGACTATCTTTGTTGAAAAATTACCGGTGAAGGTGAAGAAGAAGGTCTTGATCAGGGAGTTCATTAAGTTTGAAGAGCGGAAACTTATAAAGAAACTCCATAAGAAAGCTAACAGGTCAACGCTAGCAGATCAAAGCGGCAACTTCAATTTTGTTTGGAGCCTTAGGACTATCACAGTGGTAAGAGCAAAGGTTCAATGTTGTGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

141

Amino Acids

16.47

Weight (kDa)

10.01

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	292
AciI	CCGC	2 cut(s)	292, 351
AcsI	RAATTY	1 cut(s)	25
AfaI	GTAC	1 cut(s)	99
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	8 cut(s)	51, 79, 95, 201, 230, 287, 361, 410
AluBI	AGCT	4 cut(s)	85, 91, 208, 323
AluI	AGCT	4 cut(s)	85, 91, 208, 323
Alw26I	GTCTC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	253, 259
AsuNHI	GCTAGC	1 cut(s)	337
AxyI	CCTNAGG	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	2 cut(s)	83, 352
BlsI	GCNGC	2 cut(s)	84, 353
BmiI	GGNNCC	2 cut(s)	14, 374
BmtI	GCTAGC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	238
Bse21I	CCTNAGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	12
BshTI	ACCGGT	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	6, 264, 343
BspACI	CCGC	2 cut(s)	292, 351
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	14, 374
BspOI	GCTAGC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssMI	GATC	3 cut(s)	6, 264, 343
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	2 cut(s)	144, 282
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	212, 377
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	9, 267, 346
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	6, 264, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	98
CspAI	ACCGGT	1 cut(s)	238
CviJI	RGCY	6 cut(s)	47, 85, 91, 208, 323, 375
CviKI_1	RGCY	6 cut(s)	47, 85, 91, 208, 323, 375
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	2 cut(s)	212, 377
DpnI	GATC	3 cut(s)	8, 266, 345
DpnII	GATC	3 cut(s)	6, 264, 343
Eam1104I	CTCTTC	2 cut(s)	144, 282
EarI	CTCTTC	2 cut(s)	144, 282
Eco81I	CCTNAGG	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	128
FaiI	YATR	2 cut(s)	302, 315
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	83, 352
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	83, 352
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	83, 352
GsuI	CTGGAG	1 cut(s)	71
HapII	CCGG	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	19, 197
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	253, 259
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	3 cut(s)	121, 238, 250
HpyCH4III	ACNGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	212, 377
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	6, 264, 343
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	90, 372
LpnPI	CCDG	7 cut(s)	29, 41, 101, 141, 252, 253, 313
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	338
MalI	GATC	3 cut(s)	8, 266, 345
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	3 cut(s)	6, 264, 343
MboII	GAAGA	7 cut(s)	127, 136, 161, 188, 262, 265, 299
MluCI	AATT	3 cut(s)	25, 233, 361
MnlI	CCTC	3 cut(s)	96, 145, 207
MseI	TTAA	1 cut(s)	279
MspI	CCGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	3 cut(s)	6, 264, 343
NheI	GCTAGC	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	14, 374
PciSI	GCTCTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	19, 197
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	84, 353
PsiI	TTATAA	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	14, 374
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	83, 352
Sau3AI	GATC	3 cut(s)	6, 264, 343
SetI	ASST	8 cut(s)	87, 93, 210, 249, 261, 325, 332, 408
Sse9I	AATT	3 cut(s)	25, 233, 361
SsiI	CCGC	2 cut(s)	292, 351
SspMI	CTAG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	391
TasI	AATT	3 cut(s)	25, 233, 361
TatI	WGTACW	1 cut(s)	97
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	19, 197
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	75, 265
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	25
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.