Rorug02G0200400

Taurine catabolism dioxygenase TauD, TfdA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017780
Physical Location & Seq
Forward (+)
18741741 .. 18742139
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0200400.1

Sequence Viewer

Length: 399 bp
ATGTCGACGGTGAGCATTGAGCCTCTTCTCCACCACTGTCGCCGGGGAAACTCCCGCCACCGTTCAACGCCGAAGCTCATCAACCTCAGCTCCTCCTTGACTGCCTTTCCTAAAAAAGTTGAGTTTCGCGGCCGGAGCTTCTGTAACTTACGGCATCCTACTGCTCTCACTCTCAGAGCTTCTTCTACTGGCACCGCCGTAGCTGCGACCACCGCGCCTTTCTTCAAGGAGACATATCCTCTTGAGCAAACTGACTTAGACTCGAAATGGTGCTCCTCGTCGGACATGGCTGGGCTCCGATCTCTGAGAGAAAGAAAGAGAAATGGAATTGATCAAAGGAGGAGAGACGAGAAGCGTCAGAGAAAGGGATTGCAGCTGTCTGATTCGCCGATGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

132

Amino Acids

14.94

Weight (kDa)

10.86

Isoelectric Point (pI)

74.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017780)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0115841
rosa_laevigata RLG00000018216 RLG00000018219
rosa_multiflora Rmu_ssc0000197.1_g000027
rosa_roxburghii Rroxscaffold_2G00128600
rosa_rugosa Rorug02G0200100 Rorug02G0200400
rosa_samantha Rh2AG257100 Rh2BG268000 Rh2CG263500 Rh2DG265500
rosa_wichuraiana Rw2G020170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 129, 215
AciI CCGC 4 cut(s) 55, 129, 195, 213
AcoI YGGCCR 1 cut(s) 130
AgsI TTSAA 2 cut(s) 66, 226
AluBI AGCT 6 cut(s) 76, 90, 138, 179, 203, 376
AluI AGCT 6 cut(s) 76, 90, 138, 179, 203, 376
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 2 cut(s) 224, 339
AoxI GGCC 2 cut(s) 130, 393
ApeKI GCWGC 2 cut(s) 203, 373
AspLEI GCGC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 190, 385
BccI CCATC 1 cut(s) 385
BceAI ACGGC 2 cut(s) 167, 182
BclI TGATCA 1 cut(s) 331
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 224, 339
BisI GCNGC 3 cut(s) 130, 204, 374
BlsI GCNGC 3 cut(s) 131, 205, 375
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 193, 296
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 127, 157
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 100, 187, 296
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 3 cut(s) 82, 265, 355
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 190, 385
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 2 cut(s) 129, 215
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 132, 395
BshNI GGYRCC 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 2 cut(s) 43, 133
BsmAI GTCTC 2 cut(s) 224, 339
BsmBI CGTCTC 1 cut(s) 339
BsnI GGCC 2 cut(s) 132, 395
Bsp1286I GDGCHC 2 cut(s) 275, 297
Bsp143I GATC 2 cut(s) 299, 331
BspACI CCGC 4 cut(s) 55, 129, 195, 213
BspANI GGCC 2 cut(s) 132, 395
BspCNI CTCAG 3 cut(s) 99, 186, 297
BspFNI CGCG 2 cut(s) 129, 215
BspLI GGNNCC 2 cut(s) 193, 296
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 2 cut(s) 299, 331
Bst4CI ACNGT 3 cut(s) 10, 38, 62
Bst6I CTCTTC 1 cut(s) 30
BstDEI CTNAG 4 cut(s) 86, 173, 256, 305
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 2 cut(s) 129, 215
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 302, 334
BstMAI GTCTC 2 cut(s) 224, 339
BstMBI GATC 2 cut(s) 299, 331
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 135, 203, 212
BstSCI CCNGG 1 cut(s) 42
BstUI CGCG 2 cut(s) 129, 215
BstV1I GCAGC 2 cut(s) 190, 385
BstZI CGGCCG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 132, 395
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 217
CseI GACGC 1 cut(s) 344
CviAII CATG 1 cut(s) 286
DdeI CTNAG 4 cut(s) 86, 173, 256, 305
DpnI GATC 2 cut(s) 301, 333
DpnII GATC 2 cut(s) 299, 331
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 297
Eco52I CGGCCG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 1 cut(s) 289
FaiI YATR 2 cut(s) 235, 287
FatI CATG 1 cut(s) 285
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 130, 204, 374
FokI GGATG 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 3 cut(s) 130, 204, 374
GlaI GCGC 1 cut(s) 216
GluI GCNGC 3 cut(s) 130, 204, 374
GsaI CCCAGC 1 cut(s) 294
HaeIII GGCC 2 cut(s) 132, 395
HapII CCGG 2 cut(s) 43, 133
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 260, 383
HpaII CCGG 2 cut(s) 43, 133
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 6 cut(s) 176, 283, 299, 306, 360, 382
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 10, 283
HpyCH4III ACNGT 3 cut(s) 10, 38, 62
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 203, 212
HpyF3I CTNAG 4 cut(s) 86, 173, 256, 305
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 299, 331
LmnI GCTCC 4 cut(s) 95, 135, 278, 300
LpnPI CCDG 4 cut(s) 56, 146, 174, 276
Lsp1109I GCAGC 2 cut(s) 190, 385
LweI GCATC 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 301, 333
MboI GATC 2 cut(s) 299, 331
MboII GAAGA 3 cut(s) 17, 174, 214
MhlI GDGCHC 2 cut(s) 275, 297
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 6 cut(s) 33, 95, 103, 249, 286, 333
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 2 cut(s) 43, 133
MspR9I CCNGG 1 cut(s) 44
MvnI CGCG 2 cut(s) 129, 215
MwoI GCNNNNNNNGC 3 cut(s) 135, 203, 212
NciI CCSGG 1 cut(s) 44
NdeII GATC 2 cut(s) 299, 331
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 2 cut(s) 193, 296
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 3 cut(s) 131, 205, 375
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 193, 296
PvuII CAGCTG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 3 cut(s) 130, 204, 374
Sau3AI GATC 2 cut(s) 299, 331
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 2 cut(s) 275, 297
SetI ASST 7 cut(s) 78, 87, 92, 140, 181, 205, 378
SfaNI GCATC 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 327
SsiI CCGC 4 cut(s) 55, 129, 195, 213
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 3 cut(s) 10, 38, 62
TaqI TCGA 2 cut(s) 5, 263
TasI AATT 1 cut(s) 327
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 383
TscAI CASTG 1 cut(s) 41
TseI GCWGC 2 cut(s) 203, 373
TspRI CASTG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.