Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018136

Physical Location & Seq

Genomic Coordinates Forward (+)

53210860 .. 53212041

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTCAAAGGCATTGGTGTCGATTGCGTTGCCAAGATGAGTCTTGATAACGGCAGCAAAGCCATCTTAATGCTGCCAAGTGGTCTAATCACATCCTACAAAGCCTCCATGTCACATGGTGACACTGTTGAGTTTCCAATCTTCAATCTCCCAAGAAGAAGAATAGCATTTGAGGAGGGGCGTCTGTGGCTTTGGAATGTCTCAGTCTCGGTCTCGATCAAGAACAAGTTTCTTGGTCTCCGAATTCTTAATAAAGTTCGACTCTCAGGTCTGAATTTCAAGTTCGTTTCAGAATTGGAGTTTTTCGTTATGGAGGAAGAGTTTGATGCCAAGGTAAAGATTAAGGGGAATTCTTCCTCTAACGGTGGTGGTGGTGCTAATAGTAATGTTCAGAGAGCCAAGAACTTTGCTTGCAGGGCTCCCCAAGAAATTTCACCATCCAAGACTTTGAATTGGGAAGATCTATGGCGTTGGTTCATATTCAAAGGTTGTGAGAGCAAGGAAGAAGAAGGATTTAGGAATTGTCTACGCATTAAAGATCATGAACAAAAAAAAAAAGAGGAAATGAAAGAAGAGGCAGGGGTCTACAACACTGAGATTCTTGGGGTAGAGGACGAAGAGGAATTGGTCTACGACGGTACGGCACCGACTGGGGCGCTGGAGGCAAAGCGAGTCTGGCATTCCAAAAAATTGCATCCCGCTTATGAACAAAGAGAAAGTCATCAAGTCTCTAAACGTCTGGGATCTCATCATCCCACAGATGTTCCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.15

Weight (kDa)

8.25

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018136)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g16050
rosa_laevigata	RLG00000019529 RLG00000020897 RLG00000029850
rosa_multiflora	Rmu_sc0002276.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254280 Rroxscaffold_7G00196720
rosa_samantha	Rh6CG165700 Rh6DG157300 Rh7CG171600 Rh7CG191000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	643
AccI	GTMKAC	3 cut(s)	526, 585, 630
AciI	CCGC	1 cut(s)	699
AclWI	GGATC	1 cut(s)	751
AcsI	RAATTY	4 cut(s)	243, 274, 349, 429
AcyI	GRCGYC	1 cut(s)	181
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	640
AgsI	TTSAA	5 cut(s)	7, 145, 280, 451, 484
AluBI	AGCT	1 cut(s)	770
AluI	AGCT	1 cut(s)	770
Alw26I	GTCTC	5 cut(s)	205, 211, 217, 242, 733
AlwI	GGATC	1 cut(s)	751
ApeKI	GCWGC	2 cut(s)	54, 73
ApoI	RAATTY	4 cut(s)	243, 274, 349, 429
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
AspLEI	GCGC	1 cut(s)	658
AsuHPI	GGTGA	2 cut(s)	131, 426
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	60, 66
BccI	CCATC	2 cut(s)	71, 445
BceAI	ACGGC	2 cut(s)	67, 657
BcgI	CGANNNNNNTGC	3 cut(s)	11, 35, 45
BcoDI	GTCTC	5 cut(s)	205, 211, 217, 242, 733
BfoI	RGCGCY	1 cut(s)	659
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	55, 74
BlsI	GCNGC	2 cut(s)	56, 75
BmiI	GGNNCC	2 cut(s)	420, 645
BmrI	ACTGGG	1 cut(s)	660
BmsI	GCATC	2 cut(s)	316, 703
BmuI	ACTGGG	1 cut(s)	660
BpmI	CTGGAG	1 cut(s)	680
BsaHI	GRCGYC	1 cut(s)	181
BsaI	GGTCTC	2 cut(s)	217, 242
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 305, 335
Bse1I	ACTGG	1 cut(s)	655
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	4 cut(s)	92, 437, 694, 751
BseMII	CTCAG	3 cut(s)	216, 279, 585
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	60, 66
BshNI	GGYRCC	1 cut(s)	643
BsmAI	GTCTC	5 cut(s)	205, 211, 217, 242, 733
BsmI	GAATGC	1 cut(s)	679
Bso31I	GGTCTC	2 cut(s)	217, 242
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	4 cut(s)	216, 460, 538, 743
BspACI	CCGC	1 cut(s)	699
BspCNI	CTCAG	3 cut(s)	215, 278, 586
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	420, 645
BspPI	GGATC	1 cut(s)	751
BspT107I	GGYRCC	1 cut(s)	643
BspTNI	GGTCTC	2 cut(s)	217, 242
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	4 cut(s)	216, 460, 538, 743
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	127, 365, 638
Bst6I	CTCTTC	3 cut(s)	312, 567, 612
BstACI	GRCGYC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	202, 265, 594
BstF5I	GGATG	4 cut(s)	92, 437, 694, 751
BstH2I	RGCGCY	1 cut(s)	659
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	4 cut(s)	219, 463, 541, 746
BstMAI	GTCTC	5 cut(s)	205, 211, 217, 242, 733
BstMBI	GATC	4 cut(s)	216, 460, 538, 743
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 416, 662, 676
BstV1I	GCAGC	2 cut(s)	60, 66
BstX2I	RGATCY	2 cut(s)	460, 743
BstYI	RGATCY	2 cut(s)	460, 743
BtsCI	GGATG	4 cut(s)	92, 437, 694, 751
BtsIMutI	CAGTG	2 cut(s)	123, 591
Cac8I	GCNNGC	1 cut(s)	412
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	658
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	3 cut(s)	109, 116, 542
CviJI	RGCY	6 cut(s)	62, 104, 190, 398, 419, 770
CviKI_1	RGCY	6 cut(s)	62, 104, 190, 398, 419, 770
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	3 cut(s)	202, 265, 594
DpnI	GATC	4 cut(s)	218, 462, 540, 745
DpnII	GATC	4 cut(s)	216, 460, 538, 743
DraIII	CACNNNGTG	1 cut(s)	119
DrdI	GACNNNNNNGTC	1 cut(s)	267
DseDI	GACNNNNNNGTC	1 cut(s)	267
Eam1104I	CTCTTC	3 cut(s)	312, 567, 612
EarI	CTCTTC	3 cut(s)	312, 567, 612
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	421
Eco31I	GGTCTC	2 cut(s)	217, 242
EcoRI	GAATTC	2 cut(s)	243, 349
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	112, 119, 545
FaiI	YATR	7 cut(s)	110, 117, 311, 466, 479, 543, 705
FatI	CATG	3 cut(s)	108, 115, 541
FauI	CCCGC	1 cut(s)	706
FblI	GTMKAC	3 cut(s)	526, 585, 630
Fnu4HI	GCNGC	2 cut(s)	55, 74
FokI	GGATG	4 cut(s)	79, 424, 681, 738
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	2 cut(s)	55, 74
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	2 cut(s)	55, 74
GsuI	CTGGAG	1 cut(s)	680
HaeII	RGCGCY	1 cut(s)	659
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	658
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	112, 119, 545
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HinfI	GANTC	4 cut(s)	40, 261, 598, 672
HphI	GGTGA	2 cut(s)	131, 426
Hpy166II	GTNNAC	3 cut(s)	527, 586, 631
Hpy188I	TCNGA	4 cut(s)	242, 273, 292, 393
Hpy188III	TCNNGA	4 cut(s)	44, 214, 220, 542
Hpy8I	GTNNAC	3 cut(s)	527, 586, 631
Hpy99I	CGWCG	1 cut(s)	638
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	3 cut(s)	127, 365, 638
HpyCH4IV	ACGT	1 cut(s)	736
HpyCH4V	TGCA	2 cut(s)	414, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 416, 662, 676
HpyF3I	CTNAG	3 cut(s)	202, 265, 594
HpySE526I	ACGT	1 cut(s)	736
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	112, 119, 545
HspAI	GCGC	1 cut(s)	656
Kzo9I	GATC	4 cut(s)	216, 460, 538, 743
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	7 cut(s)	252, 400, 564, 636, 644, 661, 725
Lsp1109I	GCAGC	2 cut(s)	60, 66
LweI	GCATC	2 cut(s)	316, 703
MaeII	ACGT	1 cut(s)	736
MaeIII	GTNAC	2 cut(s)	111, 119
MalI	GATC	4 cut(s)	218, 462, 540, 745
MboI	GATC	4 cut(s)	216, 460, 538, 743
MflI	RGATCY	2 cut(s)	460, 743
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	9 cut(s)	243, 274, 293, 349, 429, 451, 520, 623, 689
MlyI	GAGTC	3 cut(s)	49, 255, 681
MseI	TTAA	5 cut(s)	68, 249, 342, 534, 772
MslI	CAYNNNNRTG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	679
MwoI	GCNNNNNNNGC	4 cut(s)	187, 416, 662, 676
NdeII	GATC	4 cut(s)	216, 460, 538, 743
NlaIII	CATG	3 cut(s)	112, 119, 545
NlaIV	GGNNCC	2 cut(s)	420, 645
NmuCI	GTSAC	2 cut(s)	111, 119
PagI	TCATGA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	56, 75
PleI	GAGTC	3 cut(s)	48, 255, 680
PpsI	GAGTC	3 cut(s)	48, 255, 680
PspN4I	GGNNCC	2 cut(s)	420, 645
PsuI	RGATCY	2 cut(s)	460, 743
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	5 cut(s)	68, 249, 342, 534, 772
SatI	GCNGC	2 cut(s)	55, 74
Sau3AI	GATC	4 cut(s)	216, 460, 538, 743
SchI	GAGTC	3 cut(s)	49, 255, 681
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	5 cut(s)	271, 336, 490, 739, 772
SfaNI	GCATC	2 cut(s)	316, 703
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	9 cut(s)	243, 274, 293, 349, 429, 451, 520, 623, 689
SsiI	CCGC	1 cut(s)	699
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	127, 365, 638
TaiI	ACGT	1 cut(s)	739
TaqI	TCGA	3 cut(s)	21, 215, 259
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	9 cut(s)	243, 274, 293, 349, 429, 451, 520, 623, 689
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	5 cut(s)	68, 249, 342, 534, 772
Tru9I	TTAA	5 cut(s)	68, 249, 342, 534, 772
TscAI	CASTG	2 cut(s)	130, 598
TseFI	GTSAC	2 cut(s)	111, 119
TseI	GCWGC	2 cut(s)	54, 73
Tsp45I	GTSAC	2 cut(s)	111, 119
TspDTI	ATGAA	4 cut(s)	466, 558, 581, 720
TspRI	CASTG	2 cut(s)	130, 598
XapI	RAATTY	4 cut(s)	243, 274, 349, 429
XmiI	GTMKAC	3 cut(s)	526, 585, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.