Rroxscaffold_7G00196720

3-phosphoinositide-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018136
Physical Location & Seq
Reverse (-)
39913398 .. 39917475
4078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196720.1

Sequence Viewer

Length: 249 bp
ATGCTCTCTCCGGTGACTCGGACTTATCAATTGCAACTTTTCGTTACGGAGGAAGATTTTGATGCCAAGTCAAAGATTCAGTGGAATTCTTCCTCTAATGGTGGTGGTGGTGCTAATAGTAACGTTGAGAGAGCCAAGAACTTTGCTTGCGGCTCCCCAAGAAATTTCACCATCCAAGACTTTGAACTGGGCAAGATCTATGGCGTTGGTTCATATTCAAAGGTTGTGAGAGCAAGGAAGAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033674 GO:0035091 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070300 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko01524 ko03320 ko04011 ko04068 ko04071 ko04140 ko04150 ko04151 ko04152 ko04210 ko04510 ko04660 ko04664 ko04722 ko04910 ko04919 ko04931 ko04960 ko05145 ko05160 ko05205 ko05213 ko05215 ko05223 ko05231 map01524 map03320 map04011 map04068 map04071 map04140 map04150 map04151 map04152 map04210 map04510 map04660 map04664 map04722 map04910 map04919 map04931 map04960 map05145 map05160 map05205 map05213 map05215 map05223 map05231
Pfam Domains
Protein Families
PH_3 Pkinase

Protein Analysis

82

Amino Acids

9.1

Weight (kDa)

9.46

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018136)

Species Orthologous Gene IDs
pyrus_communis pycom07g16050
rosa_laevigata RLG00000019529 RLG00000020897 RLG00000029850
rosa_multiflora Rmu_sc0002276.1_g000006
rosa_roxburghii Rroxscaffold_3G00254280 Rroxscaffold_7G00196720
rosa_samantha Rh6CG165700 Rh6DG157300 Rh7CG171600 Rh7CG191000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AclI AACGTT 1 cut(s) 123
AcsI RAATTY 2 cut(s) 85, 163
AgsI TTSAA 2 cut(s) 185, 219
ApoI RAATTY 2 cut(s) 85, 163
AsuHPI GGTGA 2 cut(s) 25, 160
BccI CCATC 1 cut(s) 179
BglII AGATCT 1 cut(s) 195
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 11
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 192
BssMI GATC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 148
CviJI RGCY 2 cut(s) 134, 153
CviKI_1 RGCY 2 cut(s) 134, 153
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 85
FaiI YATR 2 cut(s) 201, 214
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
HapII CCGG 1 cut(s) 11
HinfI GANTC 2 cut(s) 16, 76
HpaII CCGG 1 cut(s) 11
HphI GGTGA 2 cut(s) 25, 160
Hpy188I TCNGA 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 123
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 2 cut(s) 24, 173
LweI GCATC 1 cut(s) 52
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 3 cut(s) 13, 43, 119
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 2 cut(s) 65, 81
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 195
MluCI AATT 3 cut(s) 29, 85, 163
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 2 cut(s) 43, 103
MseI TTAA 1 cut(s) 247
MspI CCGG 1 cut(s) 11
MunI CAATTG 1 cut(s) 29
NdeII GATC 1 cut(s) 195
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 195
SaqAI TTAA 1 cut(s) 247
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 195
SchI GAGTC 1 cut(s) 10
SetI ASST 2 cut(s) 126, 225
SfaNI GCATC 1 cut(s) 52
SgeI CNNG 9 cut(s) 23, 30, 79, 148, 159, 171, 188, 200, 205
Sse9I AATT 3 cut(s) 29, 85, 163
SsiI CCGC 1 cut(s) 150
TaiI ACGT 1 cut(s) 126
TasI AATT 3 cut(s) 29, 85, 163
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 86
XapI RAATTY 2 cut(s) 85, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.