RLG00000020630

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019481
Physical Location & Seq
Reverse (-)
66948897 .. 66950163
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020630

Sequence Viewer

Length: 558 bp
ATGGGAAATGCCATCAGCAGTAGTCTTGGAAAGCCACAATTGGAATGCCAAAGAGCAAAGAGCAAAAACCAAAACCGAGCCCTAACCGGAGCAGCAGCATTGAGCATCAACCGACTGAGGAAAGAGATTACGGCGACGTTGCTCTGCGGAGGCTCTTCGTCTCCTACTCTGTCGGAGAGCTGGGAGTTGAATGAAGCGTTCAACGAGTCTATGCCTTCATTTCAATCTCTCTTGGCTTTTACGCATCCATCAGACTCTGCTCATGCAGAGCTGGATGAAATTGAAATTCCCGATACACTTAATAATGATGACGACATTGAAATGGAGGGTGGATATTCTCGAGAGTTGATGCAGCAAGCACGGACTCTAGAAGCAAAGCTTGCGTTATTATTGATGATTAGTCACAAGTATGGGACCATTGGAGCTCAAGTTTTATTTTCAATTGATATCCTCCAGCATTGTGCTTCATGCAGGGCAATGTCTATTTACATCGCTCGGAAAGTTGCAAAGTTCATAAAATGCCATGACTCATATTTGATGACCTTCTTTGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

186

Amino Acids

20.38

Weight (kDa)

5.95

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019481)

Species Orthologous Gene IDs
rosa_laevigata RLG00000020630
rosa_multiflora Rmu_sc0005885.1_g000003 Rmu_sc0019526.1_g000002
rosa_roxburghii Rroxscaffold_2G00095760
rosa_samantha Rh2AG494100 Rh2BG506400 Rh2CG480400 Rh2DG517500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 549
AgsI TTSAA 6 cut(s) 190, 202, 224, 284, 320, 441
AluBI AGCT 4 cut(s) 180, 271, 379, 425
AluI AGCT 4 cut(s) 180, 271, 379, 425
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 339
ApeKI GCWGC 3 cut(s) 92, 95, 352
ApoI RAATTY 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 1 cut(s) 414
BanII GRGCYC 2 cut(s) 82, 427
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 104, 107, 364
BccI CCATC 2 cut(s) 20, 256
BceAI ACGGC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 368
BisI GCNGC 3 cut(s) 93, 96, 353
BlsI GCNGC 3 cut(s) 94, 97, 354
Bme18I GGWCC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 415
BmsI GCATC 3 cut(s) 114, 253, 339
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 411
BsaWI WCCGGW 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 483
BseGI GGATG 2 cut(s) 244, 280
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 104, 107, 364
BseYI CCCAGC 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 549
BsmAI GTCTC 1 cut(s) 165
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 427
BsmI GAATGC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 82, 427
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 415
BspQI GCTCTTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 483
Bst6I CTCTTC 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 357, 381
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 2 cut(s) 244, 280
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstV1I GCAGC 3 cut(s) 104, 107, 364
BtgZI GCGATG 1 cut(s) 475
BtsCI GGATG 2 cut(s) 244, 280
Cac8I GCNNGC 2 cut(s) 357, 381
CaiI CAGNNNCTG 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 414
CviAII CATG 3 cut(s) 263, 468, 524
CviJI RGCY 8 cut(s) 34, 80, 153, 180, 236, 271, 379, 425
CviKI_1 RGCY 8 cut(s) 34, 80, 153, 180, 236, 271, 379, 425
DdeI CTNAG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 425
Eco24I GRGCYC 2 cut(s) 82, 427
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 425
EcoRV GATATC 1 cut(s) 448
EcoT38I GRGCYC 2 cut(s) 82, 427
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 3 cut(s) 266, 471, 527
FaiI YATR 7 cut(s) 212, 264, 411, 469, 515, 525, 532
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 427
FatI CATG 3 cut(s) 262, 467, 523
Fnu4HI GCNGC 3 cut(s) 93, 96, 353
FokI GGATG 2 cut(s) 231, 287
FriOI GRGCYC 2 cut(s) 82, 427
Fsp4HI GCNGC 3 cut(s) 93, 96, 353
FspBI CTAG 1 cut(s) 368
GluI GCNGC 3 cut(s) 93, 96, 353
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 437
HapII CCGG 1 cut(s) 87
Hin1II CATG 3 cut(s) 266, 471, 527
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 4 cut(s) 206, 254, 364, 527
HpaII CCGG 1 cut(s) 87
Hpy188I TCNGA 3 cut(s) 175, 253, 498
Hpy188III TCNNGA 4 cut(s) 290, 339, 341, 368
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 225, 553
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 4 cut(s) 266, 352, 471, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 3 cut(s) 266, 471, 527
LguI GCTCTTC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 89, 422
LpnPI CCDG 5 cut(s) 100, 166, 257, 457, 467
Lsp1109I GCAGC 3 cut(s) 104, 107, 364
LweI GCATC 3 cut(s) 114, 253, 339
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 401
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 2 cut(s) 38, 441
MhlI GDGCHC 2 cut(s) 82, 427
MluCI AATT 4 cut(s) 38, 279, 285, 441
MlyI GAGTC 4 cut(s) 215, 248, 358, 521
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 4 cut(s) 111, 143, 319, 461
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 2 cut(s) 320, 408
MspI CCGG 1 cut(s) 87
MunI CAATTG 2 cut(s) 38, 441
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 380
NlaIII CATG 3 cut(s) 266, 471, 527
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 160
PctI GAATGC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 94, 97, 354
PleI GAGTC 4 cut(s) 214, 248, 358, 521
PpsI GAGTC 4 cut(s) 214, 248, 358, 521
Psp124BI GAGCTC 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 414
PstNI CAGNNNCTG 1 cut(s) 257
RseI CAYNNNNRTG 2 cut(s) 320, 408
SacI GAGCTC 1 cut(s) 427
SapI GCTCTTC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 3 cut(s) 93, 96, 353
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 4 cut(s) 215, 248, 358, 521
SduI GDGCHC 2 cut(s) 82, 427
SetI ASST 6 cut(s) 140, 182, 273, 381, 427, 545
SfaNI GCATC 3 cut(s) 114, 253, 339
Sfr274I CTCGAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 414
SlaI CTCGAG 1 cut(s) 339
SmiMI CAYNNNNRTG 2 cut(s) 320, 408
SmlI CTYRAG 2 cut(s) 339, 426
SmoI CTYRAG 2 cut(s) 339, 426
Sse9I AATT 4 cut(s) 38, 279, 285, 441
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 427
TaiI ACGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 340
TasI AATT 4 cut(s) 38, 279, 285, 441
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 3 cut(s) 92, 95, 352
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 5 cut(s) 207, 207, 291, 456, 502
TspGWI ACGGA 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 285
XbaI TCTAGA 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 339
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.