RLG00000021785

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0022931
Physical Location & Seq
Forward (+)
78231724 .. 78233803
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021785

Sequence Viewer

Length: 366 bp
ATGTTGTGCTTGTCTTCATCAAGATCAGAGGAGGACGATGAAAGTATTGACTCTTATAGAAAAGGAGGGTACCTAGCCGAAATTTTGAGAAGGAGAAGAAATCAGAAGAGGGCCGGGCTGGAATCCATGGCGGTGCCGATGAGGCAGACCAGATTGGAGAGGGAGAGGGACTTGGCTGCGAGCTTGTCGGAGAAATTGCTTGGTTTGGAGGCTAGTTATGGCGTGGTGGTGCAGCTGCTATGTTCTTTGGATGGTGGCACATCGCACATGGATCATGGCAGTAGCGCAATGCACTCGGATCATGGCGGCAGCGAGATGCACTTGGATTACGGCAACGGCAAAACGCAGGCAGATCACGGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.4

Weight (kDa)

5.83

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022931)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021785
rosa_roxburghii Rroxscaffold_2G00126150
rosa_samantha Rh1BG241900 Rh6AG058700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 69
AccB1I GGYRCC 2 cut(s) 69, 133
AciI CCGC 2 cut(s) 131, 306
AclWI GGATC 2 cut(s) 279, 306
AcsI RAATTY 1 cut(s) 81
AfaI GTAC 1 cut(s) 71
AluBI AGCT 2 cut(s) 183, 235
AluI AGCT 2 cut(s) 183, 235
AlwI GGATC 2 cut(s) 279, 306
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 4 cut(s) 176, 232, 235, 309
ApoI RAATTY 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 115
BanI GGYRCC 2 cut(s) 69, 133
BbsI GAAGAC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 163, 222, 244, 321
BccI CCATC 1 cut(s) 245
BceAI ACGGC 2 cut(s) 346, 352
BcgI CGANNNNNNTGC 2 cut(s) 276, 310
BcnI CCSGG 1 cut(s) 115
BfaI CTAG 2 cut(s) 74, 213
BglI GCCNNNNNGGC 1 cut(s) 142
BisI GCNGC 5 cut(s) 177, 233, 236, 307, 310
BlsI GCNGC 5 cut(s) 178, 234, 237, 308, 311
Bme1390I CCNGG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 71, 135
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 4 cut(s) 163, 222, 244, 321
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 2 cut(s) 69, 133
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 113
Bsp143I GATC 4 cut(s) 23, 271, 298, 352
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 2 cut(s) 131, 306
BspANI GGCC 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 71, 135
BspPI GGATC 2 cut(s) 279, 306
BspT107I GGYRCC 2 cut(s) 69, 133
BsrDI GCAATG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 4 cut(s) 23, 271, 298, 352
BssT1I CCWWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 181, 348
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 4 cut(s) 26, 274, 301, 355
BstMBI GATC 4 cut(s) 23, 271, 298, 352
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 4 cut(s) 163, 222, 244, 321
BstV2I GAAGAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 181, 348
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 70
CviAII CATG 4 cut(s) 127, 268, 275, 302
CviJI RGCY 8 cut(s) 77, 113, 118, 176, 183, 212, 235, 360
CviKI_1 RGCY 8 cut(s) 77, 113, 118, 176, 183, 212, 235, 360
CviQI GTAC 1 cut(s) 70
DpnI GATC 4 cut(s) 25, 273, 300, 354
DpnII GATC 4 cut(s) 23, 271, 298, 352
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 4 cut(s) 130, 271, 278, 305
FaiI YATR 7 cut(s) 57, 128, 219, 241, 269, 276, 303
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 126, 267, 274, 301
Fnu4HI GCNGC 5 cut(s) 177, 233, 236, 307, 310
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 5 cut(s) 177, 233, 236, 307, 310
FspBI CTAG 2 cut(s) 74, 213
GlaI GCGC 1 cut(s) 286
GluI GCNGC 5 cut(s) 177, 233, 236, 307, 310
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 287
Hin1II CATG 4 cut(s) 130, 271, 278, 305
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 2 cut(s) 50, 122
HpaII CCGG 1 cut(s) 114
Hpy188I TCNGA 4 cut(s) 28, 105, 190, 298
Hpy188III TCNNGA 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 232, 292, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
Hsp92II CATG 4 cut(s) 130, 271, 278, 305
HspAI GCGC 1 cut(s) 285
KpnI GGTACC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 23, 271, 298, 352
LpnPI CCDG 5 cut(s) 104, 127, 163, 332, 346
Lsp1109I GCAGC 4 cut(s) 163, 222, 244, 321
LweI GCATC 1 cut(s) 306
MaeI CTAG 2 cut(s) 74, 213
MalI GATC 4 cut(s) 25, 273, 300, 354
MboI GATC 4 cut(s) 23, 271, 298, 352
MboII GAAGA 3 cut(s) 6, 108, 118
MluCI AATT 2 cut(s) 81, 194
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 8 cut(s) 22, 25, 59, 102, 135, 153, 159, 202
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 115
NcoI CCATGG 1 cut(s) 126
NdeII GATC 4 cut(s) 23, 271, 298, 352
NlaIII CATG 4 cut(s) 130, 271, 278, 305
NlaIV GGNNCC 2 cut(s) 71, 135
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 5 cut(s) 178, 234, 237, 308, 311
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 71, 135
PspPI GGNCC 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 5 cut(s) 177, 233, 236, 307, 310
Sau3AI GATC 4 cut(s) 23, 271, 298, 352
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 115
SetI ASST 3 cut(s) 75, 185, 237
SfaNI GCATC 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 2 cut(s) 81, 194
SsiI CCGC 2 cut(s) 131, 306
SspMI CTAG 2 cut(s) 74, 213
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 126
TasI AATT 2 cut(s) 81, 194
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 1 cut(s) 122
TseI GCWGC 4 cut(s) 176, 232, 235, 309
TspDTI ATGAA 2 cut(s) 6, 54
XapI RAATTY 1 cut(s) 81
XspI CTAG 2 cut(s) 74, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.