Rh1BG241900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0022931
Physical Location & Seq
Forward (+)
36476645 .. 36477303
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG241900.1

Sequence Viewer

Length: 366 bp
ATGTTGATCCTTTTTCAATCGGGGTTTCAAATTCAAACCACCCAATACACATTAGCTCACAATCCTCAAAACCCAATTCGGATCAGCAACATGTTGTGCTTGTCTTCATCAGGATCAGAGGAGGACGATGAAAGTATTGACTCTTACAGAAAAGGAGAGTACCGCGCCGGAATTTTGAGAAGGAGAAGAAATCAGAAGAGGGCCGGGCAGGAATCCATGGCGGCGCCGATGGGGCGGACCAGATTGGAGAGGGAGAGGGACTTGGCGGCGAGCTCGTCGGAGAAGCAGTCCATGGGGTCGGGGTCATTGGCGTCGAAGAGGGTTTGGAGGTCGATGAGAGTGGAATCGGAGATGGGTTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

9.64

Isoelectric Point (pI)

70.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022931)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021785
rosa_roxburghii Rroxscaffold_2G00126150
rosa_samantha Rh1BG241900 Rh6AG058700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccII CGCG 1 cut(s) 165
AciI CCGC 4 cut(s) 163, 221, 235, 266
AclWI GGATC 2 cut(s) 89, 121
AcsI RAATTY 2 cut(s) 30, 171
AcyI GRCGYC 2 cut(s) 224, 311
AfaI GTAC 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 3 cut(s) 17, 29, 35
AluBI AGCT 2 cut(s) 56, 273
AluI AGCT 2 cut(s) 56, 273
Alw21I GWGCWC 1 cut(s) 275
AlwI GGATC 2 cut(s) 89, 121
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 2 cut(s) 30, 171
AspLEI GCGC 2 cut(s) 167, 226
AspS9I GGNCC 2 cut(s) 201, 237
AsuC2I CCSGG 1 cut(s) 205
AvaII GGWCC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 275
BccI CCATC 2 cut(s) 223, 346
BcnI CCSGG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 227
BglI GCCNNNNNGGC 1 cut(s) 232
BisI GCNGC 2 cut(s) 222, 267
BlsI GCNGC 2 cut(s) 223, 268
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 201, 237
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 205
BsaHI GRCGYC 2 cut(s) 224, 311
BsaJI CCNNGG 2 cut(s) 216, 291
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
BseDI CCNNGG 2 cut(s) 216, 291
BseRI GAGGAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 2 cut(s) 168, 204
BslFI GGGAC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 6, 81, 113
Bsp19I CCATGG 2 cut(s) 216, 291
BspACI CCGC 4 cut(s) 163, 221, 235, 266
BspANI GGCC 1 cut(s) 203
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 2 cut(s) 89, 121
BspT107I GGYRCC 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 216, 291
BssMI GATC 3 cut(s) 6, 81, 113
BssNI GRCGYC 2 cut(s) 224, 311
BssT1I CCWWGG 2 cut(s) 216, 291
Bst6I CTCTTC 2 cut(s) 191, 311
BstACI GRCGYC 2 cut(s) 224, 311
BstC8I GCNNGC 1 cut(s) 271
BstDSI CCRYGG 2 cut(s) 216, 291
BstFNI CGCG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 2 cut(s) 167, 226
BstKTI GATC 3 cut(s) 9, 84, 116
BstMBI GATC 3 cut(s) 6, 81, 113
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 203
BstUI CGCG 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 2 cut(s) 216, 291
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 2 cut(s) 167, 226
Cfr13I GGNCC 2 cut(s) 201, 237
CseI GACGC 1 cut(s) 300
Csp6I GTAC 1 cut(s) 160
CviAII CATG 3 cut(s) 91, 217, 292
CviJI RGCY 3 cut(s) 56, 203, 273
CviKI_1 RGCY 3 cut(s) 56, 203, 273
CviQI GTAC 1 cut(s) 160
DinI GGCGCC 1 cut(s) 225
DpnI GATC 3 cut(s) 8, 83, 115
DpnII GATC 3 cut(s) 6, 81, 113
Eam1104I CTCTTC 2 cut(s) 191, 311
EarI CTCTTC 2 cut(s) 191, 311
EciI GGCGGA 1 cut(s) 250
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 216, 291
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 273
EcoT14I CCWWGG 2 cut(s) 216, 291
EcoT38I GRGCYC 1 cut(s) 275
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 216, 291
FaeI CATG 3 cut(s) 94, 220, 295
FaiI YATR 3 cut(s) 92, 218, 293
FaqI GGGAC 1 cut(s) 272
FatI CATG 3 cut(s) 90, 216, 291
Fnu4HI GCNGC 2 cut(s) 222, 267
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 222, 267
GlaI GCGC 2 cut(s) 166, 225
GluI GCNGC 2 cut(s) 222, 267
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 1 cut(s) 203
HapII CCGG 2 cut(s) 168, 204
HgaI GACGC 1 cut(s) 300
HhaI GCGC 2 cut(s) 167, 226
Hin1I GRCGYC 2 cut(s) 224, 311
Hin1II CATG 3 cut(s) 94, 220, 295
Hin6I GCGC 2 cut(s) 165, 224
HinP1I GCGC 2 cut(s) 165, 224
HinfI GANTC 3 cut(s) 140, 212, 344
HpaII CCGG 2 cut(s) 168, 204
Hpy188I TCNGA 5 cut(s) 81, 118, 195, 280, 349
Hpy188III TCNNGA 1 cut(s) 111
Hpy99I CGWCG 2 cut(s) 280, 316
HpyAV CCTTC 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Hsp92I GRCGYC 2 cut(s) 224, 311
Hsp92II CATG 3 cut(s) 94, 220, 295
HspAI GCGC 2 cut(s) 165, 224
KasI GGCGCC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 6, 81, 113
LpnPI CCDG 5 cut(s) 96, 181, 194, 217, 253
MalI GATC 3 cut(s) 8, 83, 115
MboI GATC 3 cut(s) 6, 81, 113
MboII GAAGA 4 cut(s) 96, 198, 208, 328
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 3 cut(s) 30, 75, 171
Mly113I GGCGCC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 8 cut(s) 75, 112, 115, 192, 243, 249, 312, 321
MspI CCGG 2 cut(s) 168, 204
MspR9I CCNGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 232
NarI GGCGCC 1 cut(s) 224
NciI CCSGG 1 cut(s) 205
NcoI CCATGG 2 cut(s) 216, 291
NdeII GATC 3 cut(s) 6, 81, 113
NlaIII CATG 3 cut(s) 94, 220, 295
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 1 cut(s) 94
PciI ACATGT 1 cut(s) 90
PfeI GAWTC 2 cut(s) 212, 344
PkrI GCNGC 2 cut(s) 223, 268
PleI GAGTC 1 cut(s) 134
PluTI GGCGCC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 134
PscI ACATGT 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 2 cut(s) 201, 237
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 1 cut(s) 275
SatI GCNGC 2 cut(s) 222, 267
Sau3AI GATC 3 cut(s) 6, 81, 113
Sau96I GGNCC 2 cut(s) 201, 237
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 275
SetI ASST 3 cut(s) 58, 275, 332
SfoI GGCGCC 1 cut(s) 225
SinI GGWCC 1 cut(s) 237
Sse9I AATT 3 cut(s) 30, 75, 171
SsiI CCGC 4 cut(s) 163, 221, 235, 266
SspDI GGCGCC 1 cut(s) 223
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 2 cut(s) 216, 291
TaqI TCGA 2 cut(s) 314, 332
TasI AATT 3 cut(s) 30, 75, 171
TauI GCSGC 2 cut(s) 224, 269
TfiI GAWTC 2 cut(s) 212, 344
TspDTI ATGAA 2 cut(s) 96, 144
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 2 cut(s) 30, 171
XceI RCATGY 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.