Rh6AG058700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0022931
Physical Location & Seq
Forward (+)
8847442 .. 8847741
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG058700.1

Sequence Viewer

Length: 300 bp
ATGTTGTGCTTGTCTTCATCAGGATTAGAGGAGGAGGATGAAAGTATTGACTCTTACAGAAAAGGAGAGTACCGCATCGGAATTTTGAGAAGGAGAAGAAATCAGAAGAGGGCCGGGCCGGAATCCATGGCGGCGCTGATGGGGCAGACCAGATTGGAGAGGGAGAGGGACTTGGCGGCGATCTTGTCGGGGAAGCAGTCCATGGGGTCGGAGTCATTGGCTTCGAAGAGGGTTTGGAGGTCGGAGAGAGTGGAATCGAAGATGGGTTGGGATTCGGTATTGGTGGGGTTTTCGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.25

Weight (kDa)

9.64

Isoelectric Point (pI)

83.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022931)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021785
rosa_roxburghii Rroxscaffold_2G00126150
rosa_samantha Rh1BG241900 Rh6AG058700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 73, 131, 176
AcsI RAATTY 1 cut(s) 81
AfaI GTAC 1 cut(s) 71
AoxI GGCC 2 cut(s) 111, 116
ApoI RAATTY 1 cut(s) 81
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 111, 116
AsuC2I CCSGG 1 cut(s) 115
AsuII TTCGAA 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 6
BccI CCATC 2 cut(s) 133, 256
BcnI CCSGG 1 cut(s) 115
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 2 cut(s) 132, 177
BlsI GCNGC 2 cut(s) 133, 178
Bme1390I CCNGG 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 111, 116
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 126, 201
BseDI CCNNGG 2 cut(s) 126, 201
BseGI GGATG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 44, 47
BshFI GGCC 2 cut(s) 113, 118
BsiSI CCGG 2 cut(s) 114, 119
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 113, 118
Bsp119I TTCGAA 1 cut(s) 224
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 2 cut(s) 126, 201
BspACI CCGC 3 cut(s) 73, 131, 176
BspANI GGCC 2 cut(s) 113, 118
BspT104I TTCGAA 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 126, 201
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 126, 201
Bst6I CTCTTC 2 cut(s) 101, 221
BstBI TTCGAA 1 cut(s) 224
BstDSI CCRYGG 2 cut(s) 126, 201
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 6
BsuRI GGCC 2 cut(s) 113, 118
BtgI CCRYGG 2 cut(s) 126, 201
BtsCI GGATG 1 cut(s) 43
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 111, 116
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 127, 202
CviJI RGCY 3 cut(s) 113, 118, 221
CviKI_1 RGCY 3 cut(s) 113, 118, 221
CviQI GTAC 1 cut(s) 70
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 101, 221
EarI CTCTTC 2 cut(s) 101, 221
Eco130I CCWWGG 2 cut(s) 126, 201
EcoT14I CCWWGG 2 cut(s) 126, 201
ErhI CCWWGG 2 cut(s) 126, 201
FaeI CATG 2 cut(s) 130, 205
FaiI YATR 2 cut(s) 128, 203
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 126, 201
Fnu4HI GCNGC 2 cut(s) 132, 177
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 132, 177
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 132, 177
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 2 cut(s) 113, 118
HapII CCGG 2 cut(s) 114, 119
HhaI GCGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 130, 205
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 5 cut(s) 50, 122, 212, 254, 272
HpaII CCGG 2 cut(s) 114, 119
Hpy188I TCNGA 4 cut(s) 80, 105, 211, 244
Hpy188III TCNNGA 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
Hsp92II CATG 2 cut(s) 130, 205
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 4 cut(s) 6, 127, 132, 163
LweI GCATC 1 cut(s) 84
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 5 cut(s) 6, 108, 118, 238, 271
MluCI AATT 1 cut(s) 81
MlyI GAGTC 2 cut(s) 44, 221
MmeI TCCRAC 2 cut(s) 189, 222
MnlI CCTC 9 cut(s) 22, 25, 28, 102, 153, 159, 222, 231, 288
MspI CCGG 2 cut(s) 114, 119
MspR9I CCNGG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 115
NcoI CCATGG 2 cut(s) 126, 201
NdeII GATC 1 cut(s) 180
NlaIII CATG 2 cut(s) 130, 205
NspV TTCGAA 1 cut(s) 224
PfeI GAWTC 3 cut(s) 122, 254, 272
PkrI GCNGC 2 cut(s) 133, 178
PleI GAGTC 2 cut(s) 44, 220
PpsI GAGTC 2 cut(s) 44, 220
PspPI GGNCC 2 cut(s) 111, 116
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SatI GCNGC 2 cut(s) 132, 177
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 2 cut(s) 111, 116
SchI GAGTC 2 cut(s) 44, 221
ScrFI CCNGG 1 cut(s) 115
SetI ASST 2 cut(s) 242, 299
SfaNI GCATC 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 224
Sse9I AATT 1 cut(s) 81
SsiI CCGC 3 cut(s) 73, 131, 176
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 2 cut(s) 126, 201
TaqI TCGA 3 cut(s) 224, 257, 293
TasI AATT 1 cut(s) 81
TauI GCSGC 2 cut(s) 134, 179
TfiI GAWTC 3 cut(s) 122, 254, 272
TspDTI ATGAA 2 cut(s) 6, 54
XapI RAATTY 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.