RLG00000023714

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0021378
Physical Location & Seq
Forward (+)
27384697 .. 27385263
567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023714

Sequence Viewer

Length: 435 bp
ATGACAGCTCCGCGCGGTTTTTGCGTGGGCTCACGTGTCTGGCCCAACTTCCGCAACGCATGTGTCCGATTGGCAGCCGGGCTCAACGCCCTTGTGGTGTCACCGGACCACCGGCTTGCGCCGGAGGATAAGCTCCTGGCTGCGCTGGACAATGCGGCGAGTGCGGTGGAGTGGCTGCAGAGGGAGGCCTCGACGATTGAGAGTGGTGGTGACTGTGATGTATGGATACGTGGTGGTGTCGTTGGCTTTGACAGGGTTTTTGTCGTGGGTGACTCTTCTGGTGGCACCACAGCTCAGCACCTGGCGGTTCCGCTCGGAAGCGGATCGGTCAAGTTGGCGCCGCTTCGGGTACGGGGGTACGTGCTGATGGCGCCATTTTTTGGTGAAGTGGAGTGGAGTGGACAAAATCAGAGCGGGAGCGTCGTGAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

145

Amino Acids

15.18

Weight (kDa)

6.07

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 6 - 127 4.8e-21 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021378)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0477501
rosa_laevigata RLG00000023714
rosa_multiflora Rmu_sc0006657.1_g000009
rosa_samantha Rh3BG245200 Rh3DG238400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 284, 337, 370
AccB7I CCANNNNNTGG 1 cut(s) 380
AccBSI CCGCTC 2 cut(s) 313, 414
AccII CGCG 2 cut(s) 13, 15
AclWI GGATC 1 cut(s) 331
AcvI CACGTG 1 cut(s) 35
AcyI GRCGYC 2 cut(s) 338, 371
AfaI GTAC 2 cut(s) 351, 359
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 34
AjnI CCWGG 2 cut(s) 135, 300
AluBI AGCT 3 cut(s) 8, 133, 293
AluI AGCT 3 cut(s) 8, 133, 293
AlwI GGATC 1 cut(s) 331
AlwNI CAGNNNCTG 1 cut(s) 301
AoxI GGCC 2 cut(s) 41, 186
ApeKI GCWGC 3 cut(s) 74, 140, 175
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspLEI GCGC 5 cut(s) 15, 121, 145, 340, 373
AspS9I GGNCC 2 cut(s) 42, 106
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 4 cut(s) 93, 221, 281, 395
AvaII GGWCC 1 cut(s) 106
BaeI ACNNNNGTAYC 2 cut(s) 341, 374
BanI GGYRCC 3 cut(s) 284, 337, 370
BanII GRGCYC 2 cut(s) 32, 84
BbrPI CACGTG 1 cut(s) 35
BbvI GCAGC 3 cut(s) 86, 127, 162
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 2 cut(s) 137, 302
BciVI GTATCC 1 cut(s) 219
BcnI CCSGG 1 cut(s) 79
BfmI CTRYAG 1 cut(s) 176
BfoI RGCGCY 2 cut(s) 341, 374
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 5 cut(s) 75, 141, 156, 176, 341
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 5 cut(s) 76, 142, 157, 177, 342
Bme1390I CCNGG 3 cut(s) 79, 137, 302
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 42, 106
BmiI GGNNCC 4 cut(s) 286, 309, 339, 372
BmrFI CCNGG 3 cut(s) 79, 137, 302
Bpu1102I GCTNAGC 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 3 cut(s) 35, 230, 361
BsaHI GRCGYC 2 cut(s) 338, 371
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 111
BseBI CCWGG 2 cut(s) 137, 302
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 86, 127, 162
Bsh1236I CGCG 2 cut(s) 13, 15
BshFI GGCC 2 cut(s) 43, 188
BshNI GGYRCC 3 cut(s) 284, 337, 370
BsiSI CCGG 4 cut(s) 78, 104, 112, 122
BslI CCNNNNNNNGG 1 cut(s) 380
BsnI GGCC 2 cut(s) 43, 188
Bsp1286I GDGCHC 2 cut(s) 32, 84
Bsp143I GATC 1 cut(s) 323
Bsp1720I GCTNAGC 1 cut(s) 294
BspANI GGCC 2 cut(s) 43, 188
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 2 cut(s) 13, 15
BspLI GGNNCC 4 cut(s) 286, 309, 339, 372
BspMAI CTGCAG 1 cut(s) 180
BspPI GGATC 1 cut(s) 331
BspT107I GGYRCC 3 cut(s) 284, 337, 370
BsrBI CCGCTC 2 cut(s) 313, 414
BsrFI RCCGGY 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 111
BssMI GATC 1 cut(s) 323
BssNI GRCGYC 2 cut(s) 338, 371
Bst2UI CCWGG 2 cut(s) 137, 302
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 280
BstACI GRCGYC 2 cut(s) 338, 371
BstBAI YACGTR 3 cut(s) 35, 230, 361
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 294
BstFNI CGCG 2 cut(s) 13, 15
BstH2I RGCGCY 2 cut(s) 341, 374
BstHHI GCGC 5 cut(s) 15, 121, 145, 340, 373
BstKTI GATC 1 cut(s) 326
BstMBI GATC 1 cut(s) 323
BstMWI GCNNNNNNNGC 3 cut(s) 21, 161, 370
BstNI CCWGG 2 cut(s) 137, 302
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 3 cut(s) 77, 135, 300
BstSFI CTRYAG 1 cut(s) 176
BstUI CGCG 2 cut(s) 13, 15
BstV1I GCAGC 3 cut(s) 86, 127, 162
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 2 cut(s) 43, 188
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 5 cut(s) 15, 121, 145, 340, 373
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 42, 106
CseI GACGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 350, 358
CviAII CATG 1 cut(s) 60
CviQI GTAC 2 cut(s) 350, 358
DdeI CTNAG 1 cut(s) 294
DinI GGCGCC 2 cut(s) 339, 372
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 188
Eco24I GRGCYC 2 cut(s) 32, 84
Eco47I GGWCC 1 cut(s) 106
Eco72I CACGTG 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 135, 300
EcoT38I GRGCYC 2 cut(s) 32, 84
EgeI GGCGCC 2 cut(s) 339, 372
EheI GGCGCC 2 cut(s) 339, 372
FaeI CATG 1 cut(s) 63
FaiI YATR 2 cut(s) 61, 223
FatI CATG 1 cut(s) 59
FauI CCCGC 1 cut(s) 407
Fnu4HI GCNGC 5 cut(s) 75, 141, 156, 176, 341
FriOI GRGCYC 2 cut(s) 32, 84
Fsp4HI GCNGC 5 cut(s) 75, 141, 156, 176, 341
GlaI GCGC 5 cut(s) 14, 120, 144, 339, 372
GluI GCNGC 5 cut(s) 75, 141, 156, 176, 341
HaeII RGCGCY 2 cut(s) 341, 374
HaeIII GGCC 2 cut(s) 43, 188
HapII CCGG 4 cut(s) 78, 104, 112, 122
HgaI GACGC 1 cut(s) 409
HhaI GCGC 5 cut(s) 15, 121, 145, 340, 373
Hin1I GRCGYC 2 cut(s) 338, 371
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 5 cut(s) 13, 119, 143, 338, 371
HinP1I GCGC 5 cut(s) 13, 119, 143, 338, 371
HinfI GANTC 1 cut(s) 272
HpaII CCGG 4 cut(s) 78, 104, 112, 122
HphI GGTGA 4 cut(s) 93, 221, 281, 395
Hpy166II GTNNAC 2 cut(s) 401, 427
Hpy188I TCNGA 3 cut(s) 68, 317, 411
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 2 cut(s) 401, 427
Hpy99I CGWCG 2 cut(s) 196, 425
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 3 cut(s) 34, 229, 360
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 161, 370
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 34, 229, 360
Hsp92I GRCGYC 2 cut(s) 338, 371
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 5 cut(s) 13, 119, 143, 338, 371
KasI GGCGCC 2 cut(s) 337, 370
Kzo9I GATC 1 cut(s) 323
LmnI GCTCC 3 cut(s) 13, 138, 417
Lsp1109I GCAGC 3 cut(s) 86, 127, 162
MaeII ACGT 3 cut(s) 34, 229, 360
MaeIII GTNAC 3 cut(s) 99, 209, 269
MalI GATC 1 cut(s) 325
MbiI CCGCTC 2 cut(s) 313, 414
MboI GATC 1 cut(s) 323
MboII GAAGA 1 cut(s) 267
MfeI CAATTG 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 32, 84
MluCI AATT 1 cut(s) 430
Mly113I GGCGCC 2 cut(s) 338, 371
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 4 cut(s) 118, 174, 178, 199
MspI CCGG 4 cut(s) 78, 104, 112, 122
MspR9I CCNGG 3 cut(s) 79, 137, 302
MunI CAATTG 1 cut(s) 430
MvaI CCWGG 2 cut(s) 137, 302
MvnI CGCG 2 cut(s) 13, 15
MwoI GCNNNNNNNGC 3 cut(s) 21, 161, 370
NarI GGCGCC 2 cut(s) 338, 371
NciI CCSGG 1 cut(s) 79
NdeII GATC 1 cut(s) 323
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 4 cut(s) 286, 309, 339, 372
NmuCI GTSAC 3 cut(s) 99, 209, 269
NspI RCATGY 1 cut(s) 63
PceI AGGCCT 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 5 cut(s) 76, 142, 157, 177, 342
PleI GAGTC 1 cut(s) 266
PluTI GGCGCC 2 cut(s) 341, 374
PmaCI CACGTG 1 cut(s) 35
PmlI CACGTG 1 cut(s) 35
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 3 cut(s) 35, 230, 361
Psp6I CCWGG 2 cut(s) 135, 300
PspCI CACGTG 1 cut(s) 35
PspGI CCWGG 2 cut(s) 135, 300
PspN4I GGNNCC 4 cut(s) 286, 309, 339, 372
PspPI GGNCC 2 cut(s) 42, 106
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 301
RsaI GTAC 2 cut(s) 351, 359
RsaNI GTAC 2 cut(s) 350, 358
SatI GCNGC 5 cut(s) 75, 141, 156, 176, 341
Sau3AI GATC 1 cut(s) 323
Sau96I GGNCC 2 cut(s) 42, 106
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 3 cut(s) 79, 137, 302
SduI GDGCHC 2 cut(s) 32, 84
SetI ASST 7 cut(s) 10, 37, 135, 232, 295, 303, 363
SfcI CTRYAG 1 cut(s) 176
SfoI GGCGCC 2 cut(s) 339, 372
SinI GGWCC 1 cut(s) 106
Sse9I AATT 1 cut(s) 430
SseBI AGGCCT 1 cut(s) 188
SspDI GGCGCC 2 cut(s) 337, 370
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 77, 135, 300
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 3 cut(s) 37, 232, 363
TaqI TCGA 1 cut(s) 191
TaqII GACCGA 1 cut(s) 316
TasI AATT 1 cut(s) 430
TauI GCSGC 2 cut(s) 158, 343
TseFI GTSAC 3 cut(s) 99, 209, 269
TseI GCWGC 3 cut(s) 74, 140, 175
Tsp45I GTSAC 3 cut(s) 99, 209, 269
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 106
XceI RCATGY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.