Rmu_sc0006657.1_g000009

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006657.1
OG0021378
Physical Location & Seq
Reverse (-)
22464 .. 24683
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006657.1_g000009.1.cds

Sequence Viewer

Length: 1002 bp
atgctggcggatatcacgaacccacctgtgatattcagactcagttgttcccaatggagcaaaatccaatttgttcaggttactcatcctgaaagagaacaagaaattagggaaaagttgcctgcggcggctggaatagttgccagaaagttgaccggtgctgacgtggcaatgccactgctgactggcttgcaaacgtggcagtggcttgggctgcggcttgggcttgggttgcggcttgagcctatccttctggcttcttggctgtggctagggctgagctgcggcttgggcctatctttcctcttcttttttttcctttcttttccttctgccgagcttctggtggctggttcgataggtttccagccggttcttagggtggggccaccagttctggactcttgggatcgagttcttcaaggtgtgagctccgtcgtcttcaaagacattacttacgaccaaaccctcaacctctccctccgtttatacaaaccaagattaacaaaccctacttcctccactgccaagctcccgatggtgctctactttcaaggcagaagtttttgcgtccgctcacgtgtctggccaacttccgcaacgcatgtgtccgattggcagccgggctcaacgcccttgtggtgtcaccggaccaccgtcttgcgctggaggataagctctcggctgcgctggacgatacggcaagtgcggtggagtggctgcaaagggaggccttcgatgattgagagtggtggtgactgtgatgcatggatacgtggtggtatcgttggctttgacagggtttttgtcttgggtaagtcttctggtggcaccacagctcagcacctggaggttccgctcggaggcggattggtcaagttgacgccacttcgggtacgggggaatgtgctgatggcgccattttttggtggagtggagtggacaaaatcagagcgggagcatcgtgaacaattgatgacattggatgtagttgaaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

333

Amino Acids

37.3

Weight (kDa)

10.08

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021378)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0477501
rosa_laevigata RLG00000023714
rosa_multiflora Rmu_sc0006657.1_g000009
rosa_samantha Rh3BG245200 Rh3DG238400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 830, 916
AccB7I CCANNNNNTGG 1 cut(s) 926
AccBSI CCGCTC 3 cut(s) 576, 859, 955
AclWI GGATC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 587
AcvI CACGTG 1 cut(s) 581
AcyI GRCGYC 2 cut(s) 884, 917
AfaI GTAC 1 cut(s) 897
AfiI CCNNNNNNNGG 2 cut(s) 863, 926
AflIII ACRYGT 1 cut(s) 580
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 4 cut(s) 422, 445, 554, 995
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 846
AluBI AGCT 6 cut(s) 282, 340, 432, 532, 678, 839
AluI AGCT 6 cut(s) 282, 340, 432, 532, 678, 839
Alw21I GWGCWC 2 cut(s) 434, 546
AlwI GGATC 1 cut(s) 417
AlwNI CAGNNNCTG 1 cut(s) 847
AoxI GGCC 4 cut(s) 292, 386, 587, 731
ApeKI GCWGC 5 cut(s) 214, 282, 619, 685, 720
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
AsiGI ACCGGT 1 cut(s) 155
AspLEI GCGC 3 cut(s) 666, 690, 919
AspS9I GGNCC 3 cut(s) 292, 386, 651
AsuC2I CCSGG 1 cut(s) 624
AsuHPI GGTGA 2 cut(s) 638, 767
AvaII GGWCC 1 cut(s) 651
BalI TGGCCA 1 cut(s) 589
BanI GGYRCC 2 cut(s) 830, 916
BanII GRGCYC 2 cut(s) 434, 629
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 433, 813
Bbv12I GWGCWC 2 cut(s) 434, 546
BbvI GCAGC 5 cut(s) 201, 269, 631, 672, 707
BccI CCATC 2 cut(s) 532, 907
BceAI ACGGC 1 cut(s) 716
BciT130I CCWGG 1 cut(s) 848
BciVI GTATCC 1 cut(s) 765
BcnI CCSGG 1 cut(s) 624
BfaI CTAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 920
BfuI GTATCC 1 cut(s) 765
BlpI GCTNAGC 2 cut(s) 278, 840
Bme1390I CCNGG 2 cut(s) 624, 848
Bme18I GGWCC 1 cut(s) 651
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 292, 386, 651
BmiI GGNNCC 4 cut(s) 387, 832, 855, 918
BmrFI CCNGG 2 cut(s) 624, 848
BmsI GCATC 2 cut(s) 754, 970
BoxI GACNNNNGTC 1 cut(s) 656
BpiI GAAGAC 2 cut(s) 433, 813
BpmI CTGGAG 2 cut(s) 688, 869
Bpu1102I GCTNAGC 2 cut(s) 278, 840
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 624
BsaAI YACGTR 2 cut(s) 581, 776
BsaHI GRCGYC 2 cut(s) 884, 917
BsaWI WCCGGW 2 cut(s) 155, 648
Bsc4I CCNNNNNNNGG 2 cut(s) 863, 926
Bse118I RCCGGY 2 cut(s) 155, 370
Bse1I ACTGG 2 cut(s) 190, 392
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 848
BseGI GGATG 2 cut(s) 85, 991
BseLI CCNNNNNNNGG 2 cut(s) 863, 926
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 3 cut(s) 55, 269, 854
BseNI ACTGG 2 cut(s) 190, 392
BseXI GCAGC 5 cut(s) 201, 269, 631, 672, 707
BshFI GGCC 4 cut(s) 294, 388, 589, 733
BshNI GGYRCC 2 cut(s) 830, 916
BshTI ACCGGT 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 434, 546
BsiSI CCGG 4 cut(s) 156, 371, 623, 649
BslI CCNNNNNNNGG 2 cut(s) 863, 926
BsnI GGCC 4 cut(s) 294, 388, 589, 733
Bsp1286I GDGCHC 3 cut(s) 434, 546, 629
Bsp143I GATC 1 cut(s) 409
Bsp1720I GCTNAGC 2 cut(s) 278, 840
BspANI GGCC 4 cut(s) 294, 388, 589, 733
BspCNI CTCAG 3 cut(s) 54, 270, 853
BspLI GGNNCC 4 cut(s) 387, 832, 855, 918
BspPI GGATC 1 cut(s) 417
BspT107I GGYRCC 2 cut(s) 830, 916
BsrBI CCGCTC 3 cut(s) 576, 859, 955
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 2 cut(s) 155, 370
BsrI ACTGG 2 cut(s) 190, 392
BssAI RCCGGY 2 cut(s) 155, 370
BssMI GATC 1 cut(s) 409
BssNI GRCGYC 2 cut(s) 884, 917
Bst2UI CCWGG 1 cut(s) 848
Bst4CI ACNGT 2 cut(s) 658, 761
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 884, 917
BstBAI YACGTR 2 cut(s) 581, 776
BstC8I GCNNGC 3 cut(s) 6, 123, 191
BstDEI CTNAG 4 cut(s) 41, 278, 377, 840
BstF5I GGATG 2 cut(s) 85, 991
BstH2I RGCGCY 1 cut(s) 920
BstHHI GCGC 3 cut(s) 666, 690, 919
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 8 cut(s) 167, 199, 214, 223, 232, 241, 291, 916
BstNI CCWGG 1 cut(s) 848
BstNSI RCATGY 1 cut(s) 608
BstPAI GACNNNNGTC 1 cut(s) 656
BstSCI CCNGG 2 cut(s) 622, 846
BstV1I GCAGC 5 cut(s) 201, 269, 631, 672, 707
BstV2I GAAGAC 2 cut(s) 433, 813
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 4 cut(s) 294, 388, 589, 733
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 85, 991
BtsI GCAGTG 3 cut(s) 176, 209, 522
BtsIMutI CAGTG 3 cut(s) 176, 209, 522
Cac8I GCNNGC 3 cut(s) 6, 123, 191
CaiI CAGNNNCTG 1 cut(s) 847
CfoI GCGC 3 cut(s) 666, 690, 919
Cfr10I RCCGGY 2 cut(s) 155, 370
Cfr13I GGNCC 3 cut(s) 292, 386, 651
CseI GACGC 2 cut(s) 559, 892
Csp6I GTAC 1 cut(s) 896
CspAI ACCGGT 1 cut(s) 155
CspCI CAANNNNNGTGG 2 cut(s) 692, 727
CviAII CATG 2 cut(s) 605, 768
CviQI GTAC 1 cut(s) 896
DdeI CTNAG 4 cut(s) 41, 278, 377, 840
DinI GGCGCC 1 cut(s) 918
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 2 cut(s) 23, 882
Ecl136II GAGCTC 1 cut(s) 432
Eco147I AGGCCT 1 cut(s) 733
Eco24I GRGCYC 2 cut(s) 434, 629
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 432
Eco72I CACGTG 1 cut(s) 581
EcoICRI GAGCTC 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 846
EcoRV GATATC 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 769
EcoT38I GRGCYC 2 cut(s) 434, 629
EgeI GGCGCC 1 cut(s) 918
EheI GGCGCC 1 cut(s) 918
FaeI CATG 2 cut(s) 608, 771
FaiI YATR 3 cut(s) 490, 606, 769
FatI CATG 2 cut(s) 604, 767
FauI CCCGC 1 cut(s) 948
FokI GGATG 2 cut(s) 72, 998
FriOI GRGCYC 2 cut(s) 434, 629
FspBI CTAG 1 cut(s) 272
GlaI GCGC 3 cut(s) 665, 689, 918
GsuI CTGGAG 2 cut(s) 688, 869
HaeII RGCGCY 1 cut(s) 920
HaeIII GGCC 4 cut(s) 294, 388, 589, 733
HapII CCGG 4 cut(s) 156, 371, 623, 649
HgaI GACGC 2 cut(s) 559, 892
HhaI GCGC 3 cut(s) 666, 690, 919
Hin1I GRCGYC 2 cut(s) 884, 917
Hin1II CATG 2 cut(s) 608, 771
Hin6I GCGC 3 cut(s) 664, 688, 917
HinP1I GCGC 3 cut(s) 664, 688, 917
HincII GTYRAC 2 cut(s) 153, 882
HindII GTYRAC 2 cut(s) 153, 882
HinfI GANTC 2 cut(s) 39, 401
HpaII CCGG 4 cut(s) 156, 371, 623, 649
HphI GGTGA 2 cut(s) 638, 767
Hpy166II GTNNAC 4 cut(s) 153, 882, 942, 968
Hpy188I TCNGA 4 cut(s) 38, 613, 863, 952
Hpy188III TCNNGA 5 cut(s) 16, 89, 398, 535, 965
Hpy8I GTNNAC 4 cut(s) 153, 882, 942, 968
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 3 cut(s) 260, 339, 744
HpyCH4III ACNGT 2 cut(s) 658, 761
HpyCH4IV ACGT 4 cut(s) 165, 197, 580, 775
HpyCH4V TGCA 3 cut(s) 193, 723, 767
HpyF10VI GCNNNNNNNGC 8 cut(s) 167, 199, 214, 223, 232, 241, 291, 916
HpyF3I CTNAG 4 cut(s) 41, 278, 377, 840
HpySE526I ACGT 4 cut(s) 165, 197, 580, 775
Hsp92I GRCGYC 2 cut(s) 884, 917
Hsp92II CATG 2 cut(s) 608, 771
HspAI GCGC 3 cut(s) 664, 688, 917
KasI GGCGCC 1 cut(s) 916
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 4 cut(s) 57, 437, 537, 958
Lsp1109I GCAGC 5 cut(s) 201, 269, 631, 672, 707
LweI GCATC 2 cut(s) 754, 970
MaeI CTAG 1 cut(s) 272
MaeII ACGT 4 cut(s) 165, 197, 580, 775
MaeIII GTNAC 3 cut(s) 79, 644, 755
MalI GATC 1 cut(s) 411
MbiI CCGCTC 3 cut(s) 576, 859, 955
MboI GATC 1 cut(s) 409
MboII GAAGA 4 cut(s) 298, 410, 433, 813
MfeI CAATTG 1 cut(s) 971
MhlI GDGCHC 3 cut(s) 434, 546, 629
MlsI TGGCCA 1 cut(s) 589
MluCI AATT 3 cut(s) 68, 105, 971
MluNI TGGCCA 1 cut(s) 589
Mly113I GGCGCC 1 cut(s) 917
MlyI GAGTC 2 cut(s) 33, 395
MnlI CCTC 9 cut(s) 314, 479, 485, 491, 529, 663, 723, 844, 857
Mox20I TGGCCA 1 cut(s) 589
Mph1103I ATGCAT 1 cut(s) 769
MscI TGGCCA 1 cut(s) 589
MseI TTAA 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 589
MspI CCGG 4 cut(s) 156, 371, 623, 649
MspR9I CCNGG 2 cut(s) 624, 848
MunI CAATTG 1 cut(s) 971
MvaI CCWGG 1 cut(s) 848
MwoI GCNNNNNNNGC 8 cut(s) 167, 199, 214, 223, 232, 241, 291, 916
NarI GGCGCC 1 cut(s) 917
NciI CCSGG 1 cut(s) 624
NdeII GATC 1 cut(s) 409
NlaIII CATG 2 cut(s) 608, 771
NlaIV GGNNCC 4 cut(s) 387, 832, 855, 918
NmeAIII GCCGAG 2 cut(s) 361, 661
NmuCI GTSAC 2 cut(s) 644, 755
NsiI ATGCAT 1 cut(s) 769
NspI RCATGY 1 cut(s) 608
PceI AGGCCT 1 cut(s) 733
PflMI CCANNNNNTGG 1 cut(s) 926
PinAI ACCGGT 1 cut(s) 155
PleI GAGTC 2 cut(s) 33, 395
PluTI GGCGCC 1 cut(s) 920
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 2 cut(s) 33, 395
Ppu21I YACGTR 2 cut(s) 581, 776
PshAI GACNNNNGTC 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 846
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 1 cut(s) 846
PspN4I GGNNCC 4 cut(s) 387, 832, 855, 918
PspPI GGNCC 3 cut(s) 292, 386, 651
PstNI CAGNNNCTG 1 cut(s) 847
RsaI GTAC 1 cut(s) 897
RsaNI GTAC 1 cut(s) 896
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 503
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 3 cut(s) 292, 386, 651
SchI GAGTC 2 cut(s) 33, 395
ScrFI CCNGG 2 cut(s) 624, 848
SduI GDGCHC 3 cut(s) 434, 546, 629
SfaNI GCATC 2 cut(s) 754, 970
SfoI GGCGCC 1 cut(s) 918
SinI GGWCC 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 3 cut(s) 68, 105, 971
SseBI AGGCCT 1 cut(s) 733
SspDI GGCGCC 1 cut(s) 916
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 434
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 2 cut(s) 622, 846
TaaI ACNGT 2 cut(s) 658, 761
TaiI ACGT 4 cut(s) 168, 200, 583, 778
TaqI TCGA 3 cut(s) 356, 412, 737
TasI AATT 3 cut(s) 68, 105, 971
TauI GCSGC 5 cut(s) 128, 131, 220, 238, 288
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 3 cut(s) 183, 209, 529
TseFI GTSAC 2 cut(s) 644, 755
TseI GCWGC 5 cut(s) 214, 282, 619, 685, 720
Tsp45I GTSAC 2 cut(s) 644, 755
TspGWI ACGGA 2 cut(s) 424, 473
TspRI CASTG 3 cut(s) 183, 209, 529
Van91I CCANNNNNTGG 1 cut(s) 926
VpaK11BI GGWCC 1 cut(s) 651
XceI RCATGY 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.