Rh3BG245200

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0021378
Physical Location & Seq
Reverse (-)
23217100 .. 23246484
29385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG245200.1

Sequence Viewer

Length: 843 bp
ATGATTTTGCTTTTGAAATTCATTGTTCCAAGCAGAATACTCAGACTCCTCAAGCTTTTTATAAGCAAGCGTCAACGTACGCAACCCAGCTTCTCCATATTCATTCAAATGCTTGATGACCTCGGTGGCATTCTCCGTGTCTTCAGCGACAGTTCAACCTGGCGTTGCCCATTCGAGGACATAAACTTCGGCCCTGTTGGATACATCGATGACAGCTCCGTCGTCTTCAAAGACATTACTTACGACCAAACCCTCAACCTCTCCCTCCGTTTATACAAACCAAGATTAACAAACCCTACTTCCTCCACTGCCAAGCTCCCGGTGGTGCTCTACTTTCAAGGCGGCAGTTTTTGCGTCGGCTCACGTGTCTGGCCAACTTCTGCAACGCATGTGTCCGACTGGCAGCCGGGCTCAACGCCCTTGTGGTGTCACCGGACCACCGGCTTGCGCCGGAGGATAAGCTCCCGGCTGCGCTGGACGATACGGCGAGTGCGGTGGAGTGGCTGCAAAGGGAGGCCTTCGATGATTGAGAGTGGTGGTATCGTTGGCTTTGACAGGGTTTTTGTCTTGGGTAAGTCTTCTGGTGGCACCACAGCTCAGCTGGCGGTTTCGCTCGGAGGCGGATCGGTCAAGTTGGCGCCGCTTCGGGTACGGGGGTACGTGCTGATGGCGCCATTTTTTGGTGGAGTGGAGTGGACAAAATCAGAGCGGAAGCGTCGTGAACAATTGATGACATTGGATGTAGTTGAAAGGTGTGAGAACATTGGCAAGATTTTGCAGAAAACCCCTCCGAGGAAGCAAGCACATAGCAATATCACTTGCTTGAGTAGTCTTTGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

280

Amino Acids

31.55

Weight (kDa)

10.59

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021378)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0477501
rosa_laevigata RLG00000023714
rosa_multiflora Rmu_sc0006657.1_g000009
rosa_samantha Rh3BG245200 Rh3DG238400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 62
AasI GACNNNNNNGTC 1 cut(s) 218
AccB1I GGYRCC 3 cut(s) 587, 637, 670
AccB7I CCANNNNNTGG 1 cut(s) 680
AccBSI CCGCTC 1 cut(s) 709
AciI CCGC 7 cut(s) 342, 493, 605, 621, 641, 709, 838
AclWI GGATC 1 cut(s) 631
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 127
AcvI CACGTG 1 cut(s) 365
AcyI GRCGYC 2 cut(s) 638, 671
AfaI GTAC 3 cut(s) 79, 651, 659
AfiI CCNNNNNNNGG 3 cut(s) 175, 680, 792
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 6 cut(s) 16, 107, 156, 229, 338, 749
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 7 cut(s) 55, 90, 216, 316, 462, 596, 601
AluI AGCT 7 cut(s) 55, 90, 216, 316, 462, 596, 601
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 1 cut(s) 631
AoxI GGCC 3 cut(s) 190, 371, 515
ApeKI GCWGC 3 cut(s) 403, 469, 504
ApoI RAATTY 1 cut(s) 17
ArsI GACNNNNNNTTYG 4 cut(s) 170, 202, 545, 577
AspLEI GCGC 4 cut(s) 450, 474, 640, 673
AspS9I GGNCC 2 cut(s) 191, 435
AsuC2I CCSGG 3 cut(s) 320, 408, 466
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 435
BaeI ACNNNNGTAYC 2 cut(s) 641, 674
BalI TGGCCA 1 cut(s) 373
BanI GGYRCC 3 cut(s) 587, 637, 670
BanII GRGCYC 1 cut(s) 413
BbrPI CACGTG 1 cut(s) 365
BbsI GAAGAC 3 cut(s) 133, 217, 570
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 415, 456, 491
BccI CCATC 1 cut(s) 661
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 1 cut(s) 194
BcnI CCSGG 3 cut(s) 320, 408, 466
BfoI RGCGCY 2 cut(s) 641, 674
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 6 cut(s) 343, 404, 470, 505, 641, 838
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 6 cut(s) 344, 405, 471, 506, 642, 839
Bme1390I CCNGG 4 cut(s) 160, 320, 408, 466
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 191, 435
BmiI GGNNCC 3 cut(s) 589, 639, 672
BmrFI CCNGG 4 cut(s) 160, 320, 408, 466
BpiI GAAGAC 3 cut(s) 133, 217, 570
Bpu1102I GCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 3 cut(s) 320, 408, 466
Bsa29I ATCGAT 1 cut(s) 207
BsaAI YACGTR 2 cut(s) 365, 661
BsaHI GRCGYC 2 cut(s) 638, 671
BsaJI CCNNGG 2 cut(s) 121, 791
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 680, 792
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 404
BseBI CCWGG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 121, 791
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 3 cut(s) 175, 680, 792
BseMII CTCAG 2 cut(s) 55, 611
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 415, 456, 491
BseYI CCCAGC 1 cut(s) 86
BshFI GGCC 3 cut(s) 192, 373, 517
BshNI GGYRCC 3 cut(s) 587, 637, 670
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 6 cut(s) 320, 407, 433, 441, 451, 466
BsiWI CGTACG 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 175, 680, 792
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 3 cut(s) 192, 373, 517
Bsp1286I GDGCHC 2 cut(s) 330, 413
Bsp143I GATC 1 cut(s) 623
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 7 cut(s) 342, 493, 605, 621, 641, 709, 838
BspANI GGCC 3 cut(s) 192, 373, 517
BspCNI CTCAG 2 cut(s) 54, 610
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 3 cut(s) 589, 639, 672
BspPI GGATC 1 cut(s) 631
BspT107I GGYRCC 3 cut(s) 587, 637, 670
BsrBI CCGCTC 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 1 cut(s) 404
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 121, 791
BssMI GATC 1 cut(s) 623
BssNI GRCGYC 2 cut(s) 638, 671
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 2 cut(s) 638, 671
BstAPI GCANNNNNTGC 1 cut(s) 351
BstBAI YACGTR 2 cut(s) 365, 661
BstC8I GCNNGC 4 cut(s) 68, 446, 603, 801
BstDEI CTNAG 2 cut(s) 41, 597
BstF5I GGATG 1 cut(s) 745
BstH2I RGCGCY 2 cut(s) 641, 674
BstHHI GCGC 4 cut(s) 450, 474, 640, 673
BstKTI GATC 1 cut(s) 626
BstMBI GATC 1 cut(s) 623
BstMWI GCNNNNNNNGC 3 cut(s) 351, 602, 670
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 4 cut(s) 158, 318, 406, 464
BstV1I GCAGC 3 cut(s) 415, 456, 491
BstV2I GAAGAC 3 cut(s) 133, 217, 570
Bsu15I ATCGAT 1 cut(s) 207
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 3 cut(s) 192, 373, 517
BsuTUI ATCGAT 1 cut(s) 207
BtsCI GGATG 1 cut(s) 745
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 4 cut(s) 68, 446, 603, 801
CfoI GCGC 4 cut(s) 450, 474, 640, 673
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 191, 435
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 3 cut(s) 59, 343, 704
Csp6I GTAC 3 cut(s) 78, 650, 658
CviAII CATG 1 cut(s) 389
CviQI GTAC 3 cut(s) 78, 650, 658
DdeI CTNAG 2 cut(s) 41, 597
DinI GGCGCC 2 cut(s) 639, 672
DpnI GATC 1 cut(s) 625
DpnII GATC 1 cut(s) 623
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 371
EciI GGCGGA 1 cut(s) 636
Eco147I AGGCCT 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 127
Eco72I CACGTG 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 413
EgeI GGCGCC 2 cut(s) 639, 672
EheI GGCGCC 2 cut(s) 639, 672
FaeI CATG 1 cut(s) 392
FaiI YATR 6 cut(s) 62, 98, 182, 274, 390, 807
FatI CATG 1 cut(s) 388
Fnu4HI GCNGC 6 cut(s) 343, 404, 470, 505, 641, 838
FokI GGATG 1 cut(s) 752
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 6 cut(s) 343, 404, 470, 505, 641, 838
GlaI GCGC 4 cut(s) 449, 473, 639, 672
GluI GCNGC 6 cut(s) 343, 404, 470, 505, 641, 838
GsaI CCCAGC 1 cut(s) 90
HaeII RGCGCY 2 cut(s) 641, 674
HaeIII GGCC 3 cut(s) 192, 373, 517
HapII CCGG 6 cut(s) 320, 407, 433, 441, 451, 466
HgaI GACGC 3 cut(s) 59, 343, 704
HhaI GCGC 4 cut(s) 450, 474, 640, 673
Hin1I GRCGYC 2 cut(s) 638, 671
Hin1II CATG 1 cut(s) 392
Hin6I GCGC 4 cut(s) 448, 472, 638, 671
HinP1I GCGC 4 cut(s) 448, 472, 638, 671
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 1 cut(s) 45
HpaII CCGG 6 cut(s) 320, 407, 433, 441, 451, 466
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 3 cut(s) 74, 696, 722
Hpy188I TCNGA 5 cut(s) 44, 397, 617, 706, 792
Hpy188III TCNNGA 1 cut(s) 719
Hpy8I GTNNAC 3 cut(s) 74, 696, 722
Hpy99I CGWCG 3 cut(s) 224, 359, 720
HpyAV CCTTC 1 cut(s) 528
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 3 cut(s) 76, 364, 660
HpyCH4V TGCA 3 cut(s) 383, 507, 778
HpyF10VI GCNNNNNNNGC 3 cut(s) 351, 602, 670
HpyF3I CTNAG 2 cut(s) 41, 597
HpySE526I ACGT 3 cut(s) 76, 364, 660
Hsp92I GRCGYC 2 cut(s) 638, 671
Hsp92II CATG 1 cut(s) 392
HspAI GCGC 4 cut(s) 448, 472, 638, 671
KasI GGCGCC 2 cut(s) 637, 670
Kzo9I GATC 1 cut(s) 623
LmnI GCTCC 3 cut(s) 221, 321, 467
Lsp1109I GCAGC 3 cut(s) 415, 456, 491
MaeII ACGT 3 cut(s) 76, 364, 660
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 625
MbiI CCGCTC 1 cut(s) 709
MboI GATC 1 cut(s) 623
MboII GAAGA 3 cut(s) 133, 217, 570
MfeI CAATTG 1 cut(s) 725
MhlI GDGCHC 2 cut(s) 330, 413
MlsI TGGCCA 1 cut(s) 373
MluCI AATT 2 cut(s) 17, 725
MluNI TGGCCA 1 cut(s) 373
Mly113I GGCGCC 2 cut(s) 638, 671
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 2 cut(s) 178, 420
Mox20I TGGCCA 1 cut(s) 373
MscI TGGCCA 1 cut(s) 373
MseI TTAA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 373
MspA1I CMGCKG 2 cut(s) 601, 840
MspI CCGG 6 cut(s) 320, 407, 433, 441, 451, 466
MspR9I CCNGG 4 cut(s) 160, 320, 408, 466
MunI CAATTG 1 cut(s) 725
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 351, 602, 670
NarI GGCGCC 2 cut(s) 638, 671
NciI CCSGG 3 cut(s) 320, 408, 466
NdeII GATC 1 cut(s) 623
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 3 cut(s) 589, 639, 672
NmuCI GTSAC 1 cut(s) 428
NspI RCATGY 1 cut(s) 392
PceI AGGCCT 1 cut(s) 517
PctI GAATGC 1 cut(s) 129
Pfl23II CGTACG 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 6 cut(s) 344, 405, 471, 506, 642, 839
PleI GAGTC 1 cut(s) 39
PluTI GGCGCC 2 cut(s) 641, 674
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 2 cut(s) 365, 661
PsiI TTATAA 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 158
PspCI CACGTG 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 158
PspLI CGTACG 1 cut(s) 77
PspN4I GGNNCC 3 cut(s) 589, 639, 672
PspPI GGNCC 2 cut(s) 191, 435
PvuII CAGCTG 1 cut(s) 601
RsaI GTAC 3 cut(s) 79, 651, 659
RsaNI GTAC 3 cut(s) 78, 650, 658
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 6 cut(s) 343, 404, 470, 505, 641, 838
Sau3AI GATC 1 cut(s) 623
Sau96I GGNCC 2 cut(s) 191, 435
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 4 cut(s) 160, 320, 408, 466
SduI GDGCHC 2 cut(s) 330, 413
SfoI GGCGCC 2 cut(s) 639, 672
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 50, 823
SmoI CTYRAG 2 cut(s) 50, 823
Sse9I AATT 2 cut(s) 17, 725
SseBI AGGCCT 1 cut(s) 517
SsiI CCGC 7 cut(s) 342, 493, 605, 621, 641, 709, 838
SspDI GGCGCC 2 cut(s) 637, 670
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 4 cut(s) 158, 318, 406, 464
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 3 cut(s) 79, 367, 663
TaqI TCGA 3 cut(s) 174, 207, 521
TaqII GACCGA 1 cut(s) 616
TasI AATT 2 cut(s) 17, 725
TauI GCSGC 3 cut(s) 345, 643, 840
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 3 cut(s) 403, 469, 504
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 10, 91
TspGWI ACGGA 3 cut(s) 125, 208, 257
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 680
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 2 cut(s) 319, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.