Rh3DG238400

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0021378
Physical Location & Seq
Reverse (-)
22895654 .. 22896118
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG238400.1

Sequence Viewer

Length: 465 bp
ATGGTGCTCTACTTTCAAGGCAGAAGTTTTTGCGTCGGCTCACGTGTCTGGCCAACTTCAGCAACGCATGTGTCCGATTGGAAGCCGGGCTCAACGCCCTTGTGGTGTCACCGGACCACCGTCTTGCGCTGGAGGATAAGCTCTCGGCTGCGCTGGACGATACGGCAAGTGCGGTGGAGTGGCTGCAAAGGGAGGCCTTCGATGATTGAGAGTGGTGGTGACTGTGATGCATGGATACGTGGTGGTATCGTTGGCTTTGACAGGGTTTTTGTCTTGGGTAAGTCTTCTGGTGGCACCACAGCTCAGCACCTGGAGGTTCCGCTCGGAGGCGGATTGGTCAAGTTGACGCCACTTCGGGTACGGGGGAATGTGCTGATGGCGCCATTTTTAGGTGGAGTGGAGTGGACAAAATCAGAGCGGGAGCATCGTGAACAATTGATGACATTGGATGTAGTTGAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

10.51

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021378)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0477501
rosa_laevigata RLG00000023714
rosa_multiflora Rmu_sc0006657.1_g000009
rosa_samantha Rh3BG245200 Rh3DG238400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 293, 379
AccBSI CCGCTC 2 cut(s) 322, 418
AciI CCGC 4 cut(s) 172, 320, 330, 418
AcoI YGGCCR 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 42
AcvI CACGTG 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 347, 380
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 326, 389
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 2 cut(s) 17, 458
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 2 cut(s) 141, 302
AluI AGCT 2 cut(s) 141, 302
Alw21I GWGCWC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 310
AoxI GGCC 2 cut(s) 50, 194
ApeKI GCWGC 2 cut(s) 148, 183
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AspLEI GCGC 3 cut(s) 129, 153, 382
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 101, 230
AvaII GGWCC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 52
BanI GGYRCC 2 cut(s) 293, 379
BanII GRGCYC 1 cut(s) 92
BbrPI CACGTG 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 135, 170
BccI CCATC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 311
BciVI GTATCC 1 cut(s) 228
BcnI CCSGG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 383
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 2 cut(s) 149, 184
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 2 cut(s) 150, 185
Bme1390I CCNGG 2 cut(s) 87, 311
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 3 cut(s) 295, 318, 381
BmrFI CCNGG 2 cut(s) 87, 311
BmsI GCATC 2 cut(s) 217, 433
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 2 cut(s) 151, 332
Bpu1102I GCTNAGC 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 2 cut(s) 44, 239
BsaHI GRCGYC 2 cut(s) 347, 380
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 389
BseBI CCWGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 2 cut(s) 326, 389
BseMII CTCAG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 135, 170
BshFI GGCC 2 cut(s) 52, 196
BshNI GGYRCC 2 cut(s) 293, 379
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 2 cut(s) 86, 112
BslI CCNNNNNNNGG 2 cut(s) 326, 389
BsnI GGCC 2 cut(s) 52, 196
Bsp1286I GDGCHC 2 cut(s) 9, 92
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 4 cut(s) 172, 320, 330, 418
BspANI GGCC 2 cut(s) 52, 196
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 3 cut(s) 295, 318, 381
BspT107I GGYRCC 2 cut(s) 293, 379
BsrBI CCGCTC 2 cut(s) 322, 418
BssNI GRCGYC 2 cut(s) 347, 380
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 121, 224
BstACI GRCGYC 2 cut(s) 347, 380
BstBAI YACGTR 2 cut(s) 44, 239
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 454
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 3 cut(s) 129, 153, 382
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 71
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 85, 309
BstV1I GCAGC 2 cut(s) 135, 170
BstV2I GAAGAC 1 cut(s) 276
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 52, 196
BtsCI GGATG 1 cut(s) 454
CaiI CAGNNNCTG 1 cut(s) 310
CfoI GCGC 3 cut(s) 129, 153, 382
Cfr13I GGNCC 1 cut(s) 114
CseI GACGC 2 cut(s) 22, 355
Csp6I GTAC 1 cut(s) 359
CspCI CAANNNNNGTGG 2 cut(s) 155, 190
CviAII CATG 2 cut(s) 68, 231
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 1 cut(s) 303
DinI GGCGCC 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 50
EciI GGCGGA 1 cut(s) 345
Eco147I AGGCCT 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 42
Eco72I CACGTG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 381
EheI GGCGCC 1 cut(s) 381
FaeI CATG 2 cut(s) 71, 234
FaiI YATR 2 cut(s) 69, 232
FatI CATG 2 cut(s) 67, 230
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 149, 184
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 149, 184
GlaI GCGC 3 cut(s) 128, 152, 381
GluI GCNGC 2 cut(s) 149, 184
GsuI CTGGAG 2 cut(s) 151, 332
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 2 cut(s) 52, 196
HapII CCGG 2 cut(s) 86, 112
HgaI GACGC 2 cut(s) 22, 355
HhaI GCGC 3 cut(s) 129, 153, 382
Hin1I GRCGYC 2 cut(s) 347, 380
Hin1II CATG 2 cut(s) 71, 234
Hin6I GCGC 3 cut(s) 127, 151, 380
HinP1I GCGC 3 cut(s) 127, 151, 380
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HpaII CCGG 2 cut(s) 86, 112
HphI GGTGA 2 cut(s) 101, 230
Hpy166II GTNNAC 3 cut(s) 345, 405, 431
Hpy188I TCNGA 3 cut(s) 76, 326, 415
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 3 cut(s) 345, 405, 431
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 121, 224
HpyCH4IV ACGT 2 cut(s) 43, 238
HpyCH4V TGCA 2 cut(s) 186, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 2 cut(s) 43, 238
Hsp92I GRCGYC 2 cut(s) 347, 380
Hsp92II CATG 2 cut(s) 71, 234
HspAI GCGC 3 cut(s) 127, 151, 380
KasI GGCGCC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 9 cut(s) 34, 99, 115, 125, 139, 247, 273, 296, 323
Lsp1109I GCAGC 2 cut(s) 135, 170
LweI GCATC 2 cut(s) 217, 433
MaeII ACGT 2 cut(s) 43, 238
MaeIII GTNAC 2 cut(s) 107, 218
MbiI CCGCTC 2 cut(s) 322, 418
MboII GAAGA 1 cut(s) 276
MfeI CAATTG 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 9, 92
MlsI TGGCCA 1 cut(s) 52
MluCI AATT 1 cut(s) 434
MluNI TGGCCA 1 cut(s) 52
Mly113I GGCGCC 1 cut(s) 380
MnlI CCTC 4 cut(s) 126, 186, 307, 320
Mox20I TGGCCA 1 cut(s) 52
Mph1103I ATGCAT 1 cut(s) 232
MscI TGGCCA 1 cut(s) 52
Msp20I TGGCCA 1 cut(s) 52
MspI CCGG 2 cut(s) 86, 112
MspR9I CCNGG 2 cut(s) 87, 311
MunI CAATTG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 379
NarI GGCGCC 1 cut(s) 380
NciI CCSGG 1 cut(s) 87
NlaIII CATG 2 cut(s) 71, 234
NlaIV GGNNCC 3 cut(s) 295, 318, 381
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 107, 218
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 71
PceI AGGCCT 1 cut(s) 196
PkrI GCNGC 2 cut(s) 150, 185
PluTI GGCGCC 1 cut(s) 383
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
Ppu21I YACGTR 2 cut(s) 44, 239
PshAI GACNNNNGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 309
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 295, 318, 381
PspPI GGNCC 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 310
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
SatI GCNGC 2 cut(s) 149, 184
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 87, 311
SduI GDGCHC 2 cut(s) 9, 92
SetI ASST 8 cut(s) 46, 143, 241, 304, 312, 318, 394, 464
SfaNI GCATC 2 cut(s) 217, 433
SfoI GGCGCC 1 cut(s) 381
SinI GGWCC 1 cut(s) 114
Sse9I AATT 1 cut(s) 434
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 4 cut(s) 172, 320, 330, 418
SspDI GGCGCC 1 cut(s) 379
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 85, 309
TaaI ACNGT 2 cut(s) 121, 224
TaiI ACGT 2 cut(s) 46, 241
TaqI TCGA 1 cut(s) 200
TasI AATT 1 cut(s) 434
TseFI GTSAC 2 cut(s) 107, 218
TseI GCWGC 2 cut(s) 148, 183
Tsp45I GTSAC 2 cut(s) 107, 218
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.