RLG00000024107

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0020683
Physical Location & Seq
Forward (+)
31973825 .. 31977534
3710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024107

Sequence Viewer

Length: 669 bp
ATGCATTTCCTCCAGAGCGTGCTCCTCCTTTTCTTTCTAAAGCGCGTGGAATGGGGGCTTGGGCTGGGCTCGAGTGAAGAAGATGACCTGCCTGAAAGCAGCGACATCCTTAACAACCCTTCAGAGAATGTTCAAGCAAGCTACACATTTTATAAACTACTGCCATCTTCTATTCTGATTCCTCTTGCTTCACTCTGTCACCATCATCCACCACCAAGCTTAATCCATCTCCATCTCTGCGACGAACAAAAAGAACAAGAAGACGAGGCTGAGTGCAGAAGCATGAAACAGCTACATAAGCAATCAAGCGTGAATCACAGGAGGGACGAAGAGATCCCAACCTCCCTAGCCTCCTCCTACTCCACCAAAGCCTTTAAGCAACCCAAATCTCTCCCGAGATCCATCAACTGCATCTTCAAAGAGCAACACCTCCTCTTCATTCTTGTTGGCATTTTCGTCGGCTCCACCTTCTTCATCCTCCAGCCCACTCTCTCCCGCCTCTCCCTTCTGAGCCCAATCCCTGCATCCCTAGATCCTTCTCCTCCGTTCACTACCGAATCAACACCGCCTCCTTCTCCACTGACCTCCCCTACAACGCAGATAAGGTCCCTGCCAGCCTCGGCAAGCGCAGGCTCAGGATCGTCGTCACCGGTGGCCCATAAAGGCTGA

Protein Analysis

223

Amino Acids

24.41

Weight (kDa)

6.19

Isoelectric Point (pI)

86.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020683)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024107 RLG00000030807
rosa_multiflora Rmu_sc0000031.1_g000037
rosa_roxburghii Rroxscaffold_2G00088930
rosa_rugosa Rorug05G0276100
rosa_samantha Rh5CG384200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 96
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 496, 566
AclWI GGATC 4 cut(s) 328, 393, 527, 646
AcuI CTGAAG 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 649
AgsI TTSAA 2 cut(s) 134, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 3 cut(s) 141, 219, 292
AluI AGCT 3 cut(s) 141, 219, 292
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 4 cut(s) 328, 393, 527, 646
Ama87I CYCGRG 2 cut(s) 70, 394
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 1 cut(s) 99
AsiGI ACCGGT 1 cut(s) 649
AspLEI GCGC 2 cut(s) 45, 629
AspS9I GGNCC 2 cut(s) 606, 655
AsuHPI GGTGA 2 cut(s) 191, 639
AvaI CYCGRG 2 cut(s) 70, 394
AvaII GGWCC 1 cut(s) 606
BanII GRGCYC 2 cut(s) 71, 515
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 111
BccI CCATC 5 cut(s) 172, 210, 234, 240, 410
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BfaI CTAG 2 cut(s) 347, 530
BfuAI ACCTGC 1 cut(s) 96
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 606
BmeT110I CYCGRG 2 cut(s) 70, 394
BmgT120I GGNCC 2 cut(s) 606, 655
BmiI GGNNCC 2 cut(s) 463, 608
BmsI GCATC 2 cut(s) 420, 533
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 634
BsaJI CCNNGG 1 cut(s) 618
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bse118I RCCGGY 1 cut(s) 649
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 4 cut(s) 105, 205, 474, 524
BseMII CTCAG 3 cut(s) 261, 500, 648
BseRI GAGGAG 4 cut(s) 14, 343, 422, 531
BseXI GCAGC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 656
BshTI ACCGGT 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 2 cut(s) 70, 394
BsiSI CCGG 1 cut(s) 650
BslFI GGGAC 2 cut(s) 338, 592
BsmFI GGGAC 2 cut(s) 338, 592
BsnI GGCC 1 cut(s) 656
BsoBI CYCGRG 2 cut(s) 70, 394
Bsp1286I GDGCHC 3 cut(s) 24, 71, 515
Bsp143I GATC 4 cut(s) 333, 398, 532, 638
BspACI CCGC 2 cut(s) 496, 566
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 3 cut(s) 262, 501, 647
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 463, 608
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 4 cut(s) 328, 393, 527, 646
BsrFI RCCGGY 1 cut(s) 649
BssAI RCCGGY 1 cut(s) 649
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 4 cut(s) 333, 398, 532, 638
Bst6I CTCTTC 2 cut(s) 324, 440
BstC8I GCNNGC 5 cut(s) 20, 139, 615, 625, 631
BstDEI CTNAG 3 cut(s) 270, 509, 634
BstF5I GGATG 4 cut(s) 105, 205, 474, 524
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 2 cut(s) 45, 629
BstKTI GATC 4 cut(s) 336, 401, 535, 641
BstMBI GATC 4 cut(s) 333, 398, 532, 638
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 3 cut(s) 333, 398, 532
BstYI RGATCY 3 cut(s) 333, 398, 532
BsuRI GGCC 1 cut(s) 656
BtsCI GGATG 4 cut(s) 105, 205, 474, 524
BtsIMutI CAGTG 1 cut(s) 578
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 5 cut(s) 20, 139, 615, 625, 631
CfoI GCGC 2 cut(s) 45, 629
Cfr10I RCCGGY 1 cut(s) 649
Cfr13I GGNCC 2 cut(s) 606, 655
CspAI ACCGGT 1 cut(s) 649
CviAII CATG 1 cut(s) 283
DdeI CTNAG 3 cut(s) 270, 509, 634
DpnI GATC 4 cut(s) 335, 400, 534, 640
DpnII GATC 4 cut(s) 333, 398, 532, 638
Eam1104I CTCTTC 2 cut(s) 324, 440
EarI CTCTTC 2 cut(s) 324, 440
Eco24I GRGCYC 2 cut(s) 71, 515
Eco47I GGWCC 1 cut(s) 606
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 2 cut(s) 70, 394
EcoO109I RGGNCCY 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 71, 515
FaeI CATG 1 cut(s) 286
FaiI YATR 4 cut(s) 153, 284, 297, 660
FaqI GGGAC 2 cut(s) 338, 592
FatI CATG 1 cut(s) 282
FauI CCCGC 1 cut(s) 503
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 4 cut(s) 92, 192, 461, 511
FriOI GRGCYC 2 cut(s) 71, 515
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 2 cut(s) 347, 530
GlaI GCGC 2 cut(s) 44, 628
GluI GCNGC 1 cut(s) 100
GsaI CCCAGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 656
HapII CCGG 1 cut(s) 650
HhaI GCGC 2 cut(s) 45, 629
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 2 cut(s) 43, 627
HinP1I GCGC 2 cut(s) 43, 627
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 3 cut(s) 178, 313, 557
HpaII CCGG 1 cut(s) 650
HphI GGTGA 2 cut(s) 191, 639
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 3 cut(s) 124, 177, 510
Hpy188III TCNNGA 3 cut(s) 13, 394, 636
Hpy8I GTNNAC 1 cut(s) 549
Hpy99I CGWCG 3 cut(s) 245, 461, 646
HpyAV CCTTC 5 cut(s) 129, 478, 515, 546, 582
HpyCH4V TGCA 4 cut(s) 4, 276, 411, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 3 cut(s) 270, 509, 634
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 2 cut(s) 43, 627
Kzo9I GATC 4 cut(s) 333, 398, 532, 638
LmnI GCTCC 2 cut(s) 27, 467
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 2 cut(s) 420, 533
MaeI CTAG 2 cut(s) 347, 530
MaeIII GTNAC 2 cut(s) 197, 645
MalI GATC 4 cut(s) 335, 400, 534, 640
MboI GATC 4 cut(s) 333, 398, 532, 638
MboII GAAGA 8 cut(s) 89, 92, 159, 272, 341, 406, 427, 463
MflI RGATCY 3 cut(s) 333, 398, 532
MhlI GDGCHC 3 cut(s) 24, 71, 515
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 111, 221, 375
MspI CCGG 1 cut(s) 650
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeII GATC 4 cut(s) 333, 398, 532, 638
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 2 cut(s) 463, 608
NmeAIII GCCGAG 1 cut(s) 599
NmuCI GTSAC 2 cut(s) 197, 645
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 70
PfeI GAWTC 3 cut(s) 178, 313, 557
PinAI ACCGGT 1 cut(s) 649
PkrI GCNGC 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 606
PsiI TTATAA 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 606
PspFI CCCAGC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 463, 608
PspPI GGNCC 2 cut(s) 606, 655
PspPPI RGGWCCY 1 cut(s) 606
PspXI VCTCGAGB 1 cut(s) 70
PsuI RGATCY 3 cut(s) 333, 398, 532
SaqAI TTAA 3 cut(s) 111, 221, 375
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 4 cut(s) 333, 398, 532, 638
Sau96I GGNCC 2 cut(s) 606, 655
SduI GDGCHC 3 cut(s) 24, 71, 515
SetI ASST 9 cut(s) 90, 143, 221, 294, 344, 432, 470, 587, 608
SfaNI GCATC 2 cut(s) 420, 533
Sfr274I CTCGAG 1 cut(s) 70
SgrAI CRCCGGYG 1 cut(s) 649
SinI GGWCC 1 cut(s) 606
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SsiI CCGC 2 cut(s) 496, 566
SspMI CTAG 2 cut(s) 347, 530
TaqI TCGA 1 cut(s) 71
TfiI GAWTC 3 cut(s) 178, 313, 557
Tru1I TTAA 3 cut(s) 111, 221, 375
Tru9I TTAA 3 cut(s) 111, 221, 375
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 2 cut(s) 197, 645
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 2 cut(s) 197, 645
TspDTI ATGAA 3 cut(s) 299, 427, 463
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 70
XspI CTAG 2 cut(s) 347, 530
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.