Rorug05G0276100
MYB Family

UDP-glucuronic acid decarboxylase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
31186823 .. 31192958
6136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0276100.1

Sequence Viewer

Length: 1563 bp
ATGGGGTGCAGAAACAGAGAGCTCACAGAAGACGATGCCGTTTCTTCTTCTTCTTCATTAAGCGAGGCCTTGCTGTTTGCGACCATGTGCATCATTGGTCTCCCAGTCGATGTTCACGTCAAGGACGGCTCTGTCTACTCTGGAATCTTCCACACTGCTTCTGTGGAAAATGAATACGGCATTGTTTTGAAGAAAGCAAGGATGACTAAAAAGGGAAAATCTGATGCGAATGTAGCAAATGGGGAGTTGATAGACACTCTTGTGATTCTTTCTGGTGACCTTGTCCAAGTTGTTACAAAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAACTGAAGCTGTTACGGGTACTGTTTCTTCTGATGAGTGTTCAAAGAATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGATGGGTGGAAGGGTGCTAATGCAAAATGGGAATGGCTTTCATGGTGTTACACCCACAAGGTCTGGCAAGGAACATGGAGGGAGGAATATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGAAAATAAGAGAAGTGATGAGATTAGAGAATCCTCTGGTGCCTGCATGAACAGGAGACAGGTGGATGATGGGTCTCAAGGGAAGCAGGATGATTTCAACCAGAAATTAGAGGTTTATAGGAAAGAAAGTGCTGACAAAGTTCAGGATACAAAGATGACATCCAAGCTATTTCCTTTCGGAGTATCTTGTGATCCTTCTACTGTAATTGTTCAACGAGACATTCAGTGCTGTGAAAGGACAACTTCAGAATACACTTCTTCCGGTTCAAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAAGCCAGCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACATCAACTGAAATGATCCCTCATGGTTCAGAGTTAAATAAAAGTGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCGCCATCTTTTACAAAGCCCATAGCAGCCACCTCTCCTGCAGTGCCAACAGTGGCAAGCATGGGTTTTATACCAACCAATTGCCCCGTGGTACCTGGTCCTGCCGTTCAGCCAGAAGTTGGATCGAATCCTTTCGCATCCCGTACATCTGTGCCTGTTAAGGTTCTCCCATACAATAATTTCACAACTGGGAATGGTAGCAGTGCTTCTCAATTTTCACAACCTATTGTTGGACACATGAGCAGTAGGGCGCAGACAGTTAGGTATGCTGGTCAGTATCCTGTTCAGGCTGGACCGACCTATGTGCATCCAAATACTCAAGCCGTTATGGTAGGACGATTTGGACAGCTTGTCTATGTGCATCCAGTTTCTCAAGATTTGGTTCAGGGTACACCAGCCATCTCACCACTATCTGCACGTCCTATGTTGACTCCACATCAGGTCCAGTTTCCAAAGCACCAAGGAACTGCAGGCCAAGCATTGCAGCTGTGTGTGCCTCCACAGTTTATGGCTACTGGACAGCAGCCTTTTCCCATTGCCAAGTCGCATCCGATTTTTGCAACCTCCCTTCCGTTCTAA

Protein Analysis

520

Amino Acids

55.25

Weight (kDa)

8.6

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 22 - 99 1.8e-25 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc65I GGTACC 1 cut(s) 1075
AccB1I GGYRCC 2 cut(s) 599, 1075
AccB7I CCANNNNNTGG 2 cut(s) 320, 1103
AccI GTMKAC 1 cut(s) 135
AclWI GGATC 3 cut(s) 746, 910, 1114
AcsI RAATTY 1 cut(s) 953
AcuI CTGAAG 3 cut(s) 375, 789, 825
AfaI GTAC 4 cut(s) 370, 1077, 1129, 1375
AfiI CCNNNNNNNGG 3 cut(s) 320, 1103, 1214
AgsI TTSAA 7 cut(s) 190, 393, 563, 658, 773, 828, 862
AhdI GACNNNNNGTC 1 cut(s) 1334
AjiI CACGTC 2 cut(s) 118, 1403
AjnI CCWGG 2 cut(s) 967, 1078
AleI CACNNNNGTG 1 cut(s) 260
AluBI AGCT 8 cut(s) 22, 317, 359, 727, 869, 961, 1333, 1471
AluI AGCT 8 cut(s) 22, 317, 359, 727, 869, 961, 1333, 1471
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 5 cut(s) 104, 610, 639, 771, 883
AlwI GGATC 3 cut(s) 746, 910, 1114
AoxI GGCC 2 cut(s) 66, 1456
ApeKI GCWGC 4 cut(s) 869, 1010, 1468, 1507
ApoI RAATTY 1 cut(s) 953
Asp700I GAANNNNTTC 1 cut(s) 1115
Asp718I GGTACC 1 cut(s) 1075
AspLEI GCGC 1 cut(s) 1237
AspS9I GGNCC 3 cut(s) 1082, 1277, 1426
AsuHPI GGTGA 3 cut(s) 287, 356, 1380
AvaII GGWCC 3 cut(s) 1082, 1277, 1426
BanI GGYRCC 2 cut(s) 599, 1075
BanII GRGCYC 1 cut(s) 24
BarI GAAGNNNNNNTAC 4 cut(s) 361, 393, 1174, 1206
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 856, 1022, 1480, 1519
BccI CCATC 5 cut(s) 314, 433, 623, 997, 1391
BceAI ACGGC 5 cut(s) 23, 142, 193, 1073, 1292
BcgI CGANNNNNNTGC 2 cut(s) 1270, 1304
BciT130I CCWGG 2 cut(s) 969, 1080
BciVI GTATCC 2 cut(s) 700, 1272
BcoDI GTCTC 5 cut(s) 104, 610, 639, 771, 883
BfmI CTRYAG 2 cut(s) 1023, 1452
BfuI GTATCC 2 cut(s) 700, 1272
BisI GCNGC 4 cut(s) 870, 1011, 1469, 1508
BlsI GCNGC 4 cut(s) 871, 1012, 1470, 1509
Bme1390I CCNGG 2 cut(s) 969, 1080
Bme18I GGWCC 3 cut(s) 1082, 1277, 1426
BmeRI GACNNNNNGTC 1 cut(s) 1334
BmgBI CACGTC 2 cut(s) 118, 1403
BmgT120I GGNCC 3 cut(s) 1082, 1277, 1426
BmiI GGNNCC 3 cut(s) 601, 847, 1077
BmrFI CCNGG 2 cut(s) 969, 1080
BmrI ACTGGG 2 cut(s) 98, 1182
BmsI GCATC 7 cut(s) 25, 99, 214, 1130, 1300, 1354, 1540
BmuI ACTGGG 2 cut(s) 98, 1182
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpuEI CTTGAG 4 cut(s) 621, 865, 1287, 1341
BsaI GGTCTC 2 cut(s) 104, 639
BsaJI CCNNGG 3 cut(s) 967, 1071, 1444
BsaWI WCCGGW 1 cut(s) 821
BsaXI ACNNNNNCTCC 2 cut(s) 963, 993
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 1103, 1214
Bse1I ACTGG 5 cut(s) 104, 1177, 1349, 1429, 1504
Bse3DI GCAATG 2 cut(s) 1463, 1518
BseBI CCWGG 2 cut(s) 969, 1080
BseDI CCNNGG 3 cut(s) 967, 1071, 1444
BseGI GGATG 8 cut(s) 207, 631, 655, 719, 1121, 1291, 1345, 1531
BseLI CCNNNNNNNGG 3 cut(s) 320, 1103, 1214
BseMI GCAATG 2 cut(s) 1463, 1518
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 5 cut(s) 104, 1177, 1349, 1429, 1504
BseXI GCAGC 4 cut(s) 856, 1022, 1480, 1519
BsgI GTGCAG 2 cut(s) 28, 1383
BshFI GGCC 2 cut(s) 68, 1458
BshNI GGYRCC 2 cut(s) 599, 1075
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 822
BslI CCNNNNNNNGG 3 cut(s) 320, 1103, 1214
BsmAI GTCTC 5 cut(s) 104, 610, 639, 771, 883
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 68, 1458
Bso31I GGTCTC 2 cut(s) 104, 639
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 751, 915, 1106
BspANI GGCC 2 cut(s) 68, 1458
BspCNI CTCAG 1 cut(s) 566
BspLI GGNNCC 3 cut(s) 601, 847, 1077
BspMAI CTGCAG 2 cut(s) 1027, 1456
BspPI GGATC 3 cut(s) 746, 910, 1114
BspT107I GGYRCC 2 cut(s) 599, 1075
BspTNI GGTCTC 2 cut(s) 104, 639
BsrDI GCAATG 2 cut(s) 1463, 1518
BsrI ACTGG 5 cut(s) 104, 1177, 1349, 1429, 1504
BssECI CCNNGG 3 cut(s) 967, 1071, 1444
BssMI GATC 3 cut(s) 751, 915, 1106
BssT1I CCWWGG 1 cut(s) 1444
Bst2UI CCWGG 2 cut(s) 969, 1080
Bst4CI ACNGT 5 cut(s) 373, 763, 1036, 1243, 1488
BstC8I GCNNGC 4 cut(s) 604, 867, 1042, 1456
BstDEI CTNAG 1 cut(s) 553
BstDSI CCRYGG 1 cut(s) 1071
BstEII GGTNACC 1 cut(s) 275
BstF5I GGATG 8 cut(s) 207, 631, 655, 719, 1121, 1291, 1345, 1531
BstHHI GCGC 1 cut(s) 1237
BstKTI GATC 3 cut(s) 754, 918, 1109
BstMAI GTCTC 5 cut(s) 104, 610, 639, 771, 883
BstMBI GATC 3 cut(s) 751, 915, 1106
BstMWI GCNNNNNNNGC 3 cut(s) 233, 1460, 1477
BstNI CCWGG 2 cut(s) 969, 1080
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 967, 1078
BstSFI CTRYAG 2 cut(s) 1023, 1452
BstV1I GCAGC 4 cut(s) 856, 1022, 1480, 1519
BstV2I GAAGAC 1 cut(s) 36
BsuI GTATCC 2 cut(s) 700, 1272
BsuRI GGCC 2 cut(s) 68, 1458
BtgI CCRYGG 1 cut(s) 1071
BtrI CACGTC 2 cut(s) 118, 1403
BtsCI GGATG 8 cut(s) 207, 631, 655, 719, 1121, 1291, 1345, 1531
BtsI GCAGTG 3 cut(s) 153, 1032, 1192
BtsIMutI CAGTG 6 cut(s) 153, 530, 791, 1032, 1041, 1192
Cac8I GCNNGC 4 cut(s) 604, 867, 1042, 1456
CfoI GCGC 1 cut(s) 1237
Cfr13I GGNCC 3 cut(s) 1082, 1277, 1426
CsiI ACCWGGT 1 cut(s) 1078
Csp6I GTAC 4 cut(s) 369, 1076, 1128, 1374
CviAII CATG 7 cut(s) 85, 479, 512, 607, 923, 1045, 1222
CviQI GTAC 4 cut(s) 369, 1076, 1128, 1374
DdeI CTNAG 1 cut(s) 553
DpnI GATC 3 cut(s) 753, 917, 1108
DpnII GATC 3 cut(s) 751, 915, 1106
DrdI GACNNNNNNGTC 1 cut(s) 131
DriI GACNNNNNGTC 1 cut(s) 1334
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1105I GACNNNNNGTC 1 cut(s) 1334
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 1444
Eco147I AGGCCT 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 2 cut(s) 104, 639
Eco47I GGWCC 3 cut(s) 1082, 1277, 1426
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 3 cut(s) 375, 789, 825
Eco91I GGTNACC 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 967, 1078
EcoT14I CCWWGG 1 cut(s) 1444
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 1444
FaeI CATG 7 cut(s) 88, 482, 515, 610, 926, 1048, 1225
FalI AAGNNNNNCTT 2 cut(s) 787, 819
FatI CATG 7 cut(s) 84, 478, 511, 606, 922, 1044, 1221
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 870, 1011, 1469, 1508
FokI GGATG 8 cut(s) 214, 638, 662, 706, 1108, 1278, 1332, 1518
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 4 cut(s) 870, 1011, 1469, 1508
GlaI GCGC 1 cut(s) 1236
GluI GCNGC 4 cut(s) 870, 1011, 1469, 1508
HaeIII GGCC 2 cut(s) 68, 1458
HapII CCGG 1 cut(s) 822
HhaI GCGC 1 cut(s) 1237
Hin1II CATG 7 cut(s) 88, 482, 515, 610, 926, 1048, 1225
Hin6I GCGC 1 cut(s) 1235
HinP1I GCGC 1 cut(s) 1235
HincII GTYRAC 1 cut(s) 1413
HindII GTYRAC 1 cut(s) 1413
HinfI GANTC 7 cut(s) 144, 265, 419, 535, 590, 1111, 1414
HpaII CCGG 1 cut(s) 822
HphI GGTGA 3 cut(s) 287, 356, 1380
Hpy166II GTNNAC 4 cut(s) 115, 136, 1376, 1413
Hpy188I TCNGA 8 cut(s) 223, 382, 556, 740, 808, 895, 931, 1536
Hpy188III TCNNGA 3 cut(s) 141, 704, 1358
Hpy8I GTNNAC 4 cut(s) 115, 136, 1376, 1413
HpyAV CCTTC 3 cut(s) 441, 765, 1562
HpyCH4III ACNGT 5 cut(s) 373, 763, 1036, 1243, 1488
HpyCH4IV ACGT 2 cut(s) 117, 1402
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 1460, 1477
HpyF3I CTNAG 1 cut(s) 553
HpySE526I ACGT 2 cut(s) 117, 1402
Hsp92II CATG 7 cut(s) 88, 482, 515, 610, 926, 1048, 1225
HspAI GCGC 1 cut(s) 1235
KpnI GGTACC 1 cut(s) 1079
Kzo9I GATC 3 cut(s) 751, 915, 1106
LmnI GCTCC 1 cut(s) 971
Lsp1109I GCAGC 4 cut(s) 856, 1022, 1480, 1519
LweI GCATC 7 cut(s) 25, 99, 214, 1130, 1300, 1354, 1540
MabI ACCWGGT 1 cut(s) 1078
MaeII ACGT 2 cut(s) 117, 1402
MaeIII GTNAC 5 cut(s) 275, 292, 344, 361, 484
MalI GATC 3 cut(s) 753, 917, 1108
MboI GATC 3 cut(s) 751, 915, 1106
MfeI CAATTG 1 cut(s) 1063
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 7 cut(s) 665, 765, 889, 953, 1063, 1162, 1196
MlyI GAGTC 2 cut(s) 428, 1408
MmeI TCCRAC 2 cut(s) 1084, 1195
MroXI GAANNNNTTC 1 cut(s) 1115
MseI TTAA 4 cut(s) 59, 935, 957, 1143
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 3 cut(s) 317, 869, 1471
MspI CCGG 1 cut(s) 822
MspR9I CCNGG 2 cut(s) 969, 1080
MunI CAATTG 1 cut(s) 1063
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 2 cut(s) 969, 1080
MwoI GCNNNNNNNGC 3 cut(s) 233, 1460, 1477
NdeII GATC 3 cut(s) 751, 915, 1106
NlaIII CATG 7 cut(s) 88, 482, 515, 610, 926, 1048, 1225
NlaIV GGNNCC 3 cut(s) 601, 847, 1077
NmuCI GTSAC 2 cut(s) 275, 344
OliI CACNNNNGTG 1 cut(s) 260
PceI AGGCCT 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 1115
PfeI GAWTC 5 cut(s) 144, 265, 535, 590, 1111
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 2 cut(s) 320, 1103
PkrI GCNGC 4 cut(s) 871, 1012, 1470, 1509
PleI GAGTC 2 cut(s) 427, 1408
PpsI GAGTC 2 cut(s) 427, 1408
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 967, 1078
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 967, 1078
PspN4I GGNNCC 3 cut(s) 601, 847, 1077
PspPI GGNCC 3 cut(s) 1082, 1277, 1426
PstI CTGCAG 2 cut(s) 1027, 1456
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 3 cut(s) 317, 869, 1471
RsaI GTAC 4 cut(s) 370, 1077, 1129, 1375
RsaNI GTAC 4 cut(s) 369, 1076, 1128, 1374
RseI CAYNNNNRTG 1 cut(s) 260
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 4 cut(s) 59, 935, 957, 1143
SatI GCNGC 4 cut(s) 870, 1011, 1469, 1508
Sau3AI GATC 3 cut(s) 751, 915, 1106
Sau96I GGNCC 3 cut(s) 1082, 1277, 1426
SchI GAGTC 2 cut(s) 428, 1408
ScrFI CCNGG 2 cut(s) 969, 1080
SduI GDGCHC 1 cut(s) 24
SexAI ACCWGGT 1 cut(s) 1078
SfaNI GCATC 7 cut(s) 25, 99, 214, 1130, 1300, 1354, 1540
SfcI CTRYAG 2 cut(s) 1023, 1452
SinI GGWCC 3 cut(s) 1082, 1277, 1426
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 4 cut(s) 636, 880, 1302, 1356
SmoI CTYRAG 4 cut(s) 636, 880, 1302, 1356
Sse9I AATT 7 cut(s) 665, 765, 889, 953, 1063, 1162, 1196
SseBI AGGCCT 1 cut(s) 68
SstI GAGCTC 1 cut(s) 24
StuI AGGCCT 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 967, 1078
StyI CCWWGG 1 cut(s) 1444
TaaI ACNGT 5 cut(s) 373, 763, 1036, 1243, 1488
TaiI ACGT 2 cut(s) 120, 1405
TaqI TCGA 2 cut(s) 108, 1109
TaqII GACCGA 1 cut(s) 1294
TasI AATT 7 cut(s) 665, 765, 889, 953, 1063, 1162, 1196
TfiI GAWTC 5 cut(s) 144, 265, 535, 590, 1111
Tru1I TTAA 4 cut(s) 59, 935, 957, 1143
Tru9I TTAA 4 cut(s) 59, 935, 957, 1143
TscAI CASTG 6 cut(s) 160, 537, 791, 1032, 1041, 1192
TseFI GTSAC 2 cut(s) 275, 344
TseI GCWGC 4 cut(s) 869, 1010, 1468, 1507
Tsp45I GTSAC 2 cut(s) 275, 344
TspDTI ATGAA 4 cut(s) 45, 186, 467, 623
TspGWI ACGGA 1 cut(s) 1545
TspRI CASTG 6 cut(s) 160, 537, 791, 1032, 1041, 1192
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 2 cut(s) 320, 1103
VpaK11BI GGWCC 3 cut(s) 1082, 1277, 1426
XapI RAATTY 1 cut(s) 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.