Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

62442639 .. 62444069

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGCTCAGAAACCTGGTTACTTTGTGCTGGATTCAATGTCAGTCTGGAATCTTCTTAGAGAATTCCGCATTCGGAAGGTTCACATGGCTGTGGTTCTCAATGAATATGGTGGAACTGTAGGGATAATTACCCTAGAAGATGTGGTGGAGGAAATTGTTGGTAAACTTTCGTACCCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

60

Amino Acids

6.86

Weight (kDa)

5.64

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	8 - 53	2.4e-07	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	62
BaeI	ACNNNNGTAYC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	6, 56
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	117
CsiI	ACCWGGT	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	2 cut(s)	5, 89
CviKI_1	RGCY	2 cut(s)	5, 89
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	6, 56
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	86, 108
FatI	CATG	1 cut(s)	84
FspBI	CTAG	1 cut(s)	134
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	2 cut(s)	32, 49
Hpy166II	GTNNAC	2 cut(s)	82, 164
Hpy188I	TCNGA	2 cut(s)	9, 75
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	82, 164
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	118
HpyF3I	CTNAG	2 cut(s)	6, 56
Hsp92II	CATG	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	14, 27, 31
MabI	ACCWGGT	1 cut(s)	13
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	44, 149
MluCI	AATT	3 cut(s)	62, 126, 153
MnlI	CCTC	1 cut(s)	142
MslI	CAYNNNNRTG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	15
NlaIII	CATG	1 cut(s)	88
PctI	GAATGC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	32, 49
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	2 cut(s)	16, 81
SexAI	ACCWGGT	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	117
SgeI	CNNG	6 cut(s)	26, 27, 41, 58, 97, 146
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	62, 126, 153
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	3 cut(s)	62, 126, 153
TfiI	GAWTC	2 cut(s)	32, 49
TspDTI	ATGAA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	62
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.