Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

37463140 .. 37464135

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTGAAGTGTGTTGTTGTTTTAGCAGCTATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGAAGGTTGTGGTCAATGCAAGCTATGGGGTTGTTGACAAGTGCATGTTAATGTTCAGAAATGCTTGGCCGAAGACGCTGCTGGTTCTTCAGGTTTTTAAAGAGCAGGGTTTGATTTTGGCGGCGCTTTTGGGTCTCTGGGCTTTTTTCTCAATGGCAGAGACTTCGATTACCACGCTATGGCCTTGGAAGGTGCGTGAGTTAGCTGAGAAAGAGCCTGAAAATGGCGTCTTCGGATTGCTTCGCAATGATGTGACTCGGTTCTTGGCAACCATACTTGTTGGCACAACTGTTGTCAATATTGGAGCAACTGCTTTAGTTACAGAGGCTGCAACAGCGATATTTGGTGAAGCTGGTGTTAGTGCAGCAACTGGAGTAATGACTGTATGTCTCATTTTCCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

160

Amino Acids

17.16

Weight (kDa)

8.78

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	63 - 157	7.4e-19	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AciI	CCGC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	255, 299
AhdI	GACNNNNNGTC	1 cut(s)	462
AluBI	AGCT	5 cut(s)	29, 68, 99, 281, 428
AluI	AGCT	5 cut(s)	29, 68, 99, 281, 428
Alw26I	GTCTC	3 cut(s)	215, 230, 470
AlwNI	CAGNNNCTG	2 cut(s)	404, 446
AoxI	GGCC	2 cut(s)	143, 257
ApeKI	GCWGC	4 cut(s)	26, 154, 404, 440
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	16, 434
BbsI	GAAGAC	2 cut(s)	155, 298
BbvI	GCAGC	4 cut(s)	38, 141, 391, 452
BcgI	CGANNNNNNTGC	4 cut(s)	136, 170, 222, 256
BcoDI	GTCTC	3 cut(s)	215, 230, 470
BfaI	CTAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	5 cut(s)	27, 155, 198, 405, 441
BlsI	GCNGC	5 cut(s)	28, 156, 199, 406, 442
BmeRI	GACNNNNNGTC	1 cut(s)	462
BpiI	GAAGAC	2 cut(s)	155, 298
BpmI	CTGGAG	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 299
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	2 cut(s)	255, 299
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	451
BseXI	GCAGC	4 cut(s)	38, 141, 391, 452
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	145, 259
BslI	CCNNNNNNNGG	2 cut(s)	255, 299
BsmAI	GTCTC	3 cut(s)	215, 230, 470
BsnI	GGCC	2 cut(s)	145, 259
Bso31I	GGTCTC	1 cut(s)	215
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	145, 259
BspCNI	CTCAG	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	260
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	367, 460
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstMAI	GTCTC	3 cut(s)	215, 230, 470
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 410
BstNSI	RCATGY	1 cut(s)	124
BstV1I	GCAGC	4 cut(s)	38, 141, 391, 452
BstV2I	GAAGAC	2 cut(s)	155, 298
BsuRI	GGCC	2 cut(s)	145, 259
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	2 cut(s)	404, 446
CfoI	GCGC	1 cut(s)	202
CseI	GACGC	2 cut(s)	160, 292
CviAII	CATG	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	175
DriI	GACNNNNNGTC	1 cut(s)	462
EaeI	YGGCCR	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	124
FaiI	YATR	7 cut(s)	32, 54, 102, 122, 256, 350, 463
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	5 cut(s)	27, 155, 198, 405, 441
Fsp4HI	GCNGC	5 cut(s)	27, 155, 198, 405, 441
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	5 cut(s)	27, 155, 198, 405, 441
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	145, 259
HgaI	GACGC	2 cut(s)	160, 292
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	331
HphI	GGTGA	2 cut(s)	16, 434
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	134, 311
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	73, 259
HpyCH4III	ACNGT	2 cut(s)	367, 460
HpyCH4V	TGCA	4 cut(s)	95, 120, 407, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 410
HpyF3I	CTNAG	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	7 cut(s)	143, 152, 167, 199, 306, 414, 432
Lsp1109I	GCAGC	4 cut(s)	38, 141, 391, 452
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	328, 394
MboII	GAAGA	3 cut(s)	155, 160, 298
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	1 cut(s)	394
MseI	TTAA	2 cut(s)	125, 174
MslI	CAYNNNNRTG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	151, 410
NlaIII	CATG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	28, 156, 199, 406, 442
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PstNI	CAGNNNCTG	2 cut(s)	404, 446
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	125, 174
SatI	GCNGC	5 cut(s)	27, 155, 198, 405, 441
SchI	GAGTC	1 cut(s)	325
SetI	ASST	8 cut(s)	31, 70, 84, 101, 171, 270, 283, 430
SmiMI	CAYNNNNRTG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	367, 460
TaqI	TCGA	1 cut(s)	242
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	125, 174
Tru9I	TTAA	2 cut(s)	125, 174
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	4 cut(s)	26, 154, 404, 440
Tsp45I	GTSAC	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	255
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.