Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004950.1

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

34907 .. 36093

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004950.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgcttaaaactcgcgtcgccgtcgacatcaacgtcctccgtcgcaaggattttcgggactacgagtccttcatcgtccaatgggggagagcttttgctgtggagggtatggtcaatgcaagttatggggttgttgacaagtgcatattgatgttcagaaatgcttggccgaaaacgctgctggttcttcaagtttttaaagagcagggtttgattttgggggggcttttgggtctctcggcttttttctcaatggcagagacttcgattaccatgctatggccttggaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

98

Amino Acids

11.23

Weight (kDa)

9.58

Isoelectric Point (pI)

22.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	46, 279
AgsI	TTSAA	1 cut(s)	191
AhdI	GACNNNNNGTC	1 cut(s)	64
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	239, 254
AoxI	GGCC	2 cut(s)	167, 281
ApeKI	GCWGC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	5
BcgI	CGANNNNNNTGC	6 cut(s)	160, 194, 246, 256, 280, 290
BcoDI	GTCTC	2 cut(s)	239, 254
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
BmeRI	GACNNNNNGTC	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 279
BseDI	CCNNGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	46, 279
BseXI	GCAGC	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	169, 283
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	46, 279
BsmAI	GTCTC	2 cut(s)	239, 254
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	169, 283
Bso31I	GGTCTC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	169, 283
BspFNI	CGCG	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	15
BstMAI	GTCTC	2 cut(s)	239, 254
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	169, 283
CseI	GACGC	1 cut(s)	4
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	5 cut(s)	92, 169, 226, 242, 283
CviKI_1	RGCY	5 cut(s)	92, 169, 226, 242, 283
DraI	TTTAAA	1 cut(s)	199
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	167
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	277
FaiI	YATR	6 cut(s)	110, 126, 146, 275, 280, 295
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	169, 283
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	2 cut(s)	25, 136
HindII	GTYRAC	2 cut(s)	25, 136
HinfI	GANTC	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	25, 136
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	2 cut(s)	25, 136
Hpy99I	CGWCG	3 cut(s)	20, 26, 45
HpyAV	CCTTC	2 cut(s)	79, 283
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	119, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	277
LpnPI	CCDG	2 cut(s)	167, 191
Lsp1109I	GCAGC	1 cut(s)	165
MaeII	ACGT	1 cut(s)	33
MboII	GAAGA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	2 cut(s)	47, 97
MseI	TTAA	2 cut(s)	6, 198
MslI	CAYNNNNRTG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	6, 198
SatI	GCNGC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	74
SetI	ASST	3 cut(s)	36, 94, 294
SmiMI	CAYNNNNRTG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	284
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	24, 266
Tru1I	TTAA	2 cut(s)	6, 198
Tru9I	TTAA	2 cut(s)	6, 198
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.