Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

32014292 .. 32020936

Gene Structure 6645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTCAGCAGACACTCTCACCAAACCCCTCTCCTCTTCACCAGCAGCAAACAAAACCCACGCTCAAGATGCGAGGGTATTGACTTGTTTGGTAATAGAGCTCGTTTGAGAGCTGTAGGTAAAGATAGTGAGAGTTCTAGTGGTACAAATGCTGTTTTGGGTTCGAGTATTGATTTTGTTAGGGTAATGGTGAAGTGTGGAGTTGTTTTAGCAGCTATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGTTGTGAAGGGTGTGGTCAATGCAAGCTATGGGGTTGTTGACCAGTGCATGTTAATGTTCAGAAATGCTTGGCCGAAGACGCTGCTGGTTCTTCAGGTTTTTAAAGAGCAGGGTTTGATTTTGGCGGCGCTTTTGGGTCTCTCAGCTTTTTTCTCAATGGCAGAGACTTCGATTACCACGCTATGGCCTTGGAAGGTGCGTGAGTTGGCTGAGAAAGAGCCTGAAAATGGCGTCTTCGGATTGCTTCGCAATGATGTGACTCGGTTCTTGGCAACCATACTTATTGGCACAACTGTTGTCAATATTGGAGCATCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

192

Amino Acids

20.86

Weight (kDa)

9.74

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	125 - 192	2.6e-14	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	441
AciI	CCGC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	441, 485
AluBI	AGCT	6 cut(s)	101, 113, 215, 254, 285, 404
AluI	AGCT	6 cut(s)	101, 113, 215, 254, 285, 404
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	401, 416
AoxI	GGCC	2 cut(s)	329, 443
ApeKI	GCWGC	3 cut(s)	45, 212, 340
AspLEI	GCGC	1 cut(s)	388
AsuHPI	GGTGA	3 cut(s)	11, 31, 202
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	2 cut(s)	341, 484
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	3 cut(s)	57, 224, 327
BcgI	CGANNNNNNTGC	4 cut(s)	322, 356, 408, 442
BcoDI	GTCTC	2 cut(s)	401, 416
BfaI	CTAG	2 cut(s)	138, 246
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	389
BisI	GCNGC	4 cut(s)	46, 213, 341, 384
BlsI	GCNGC	4 cut(s)	47, 214, 342, 385
BmsI	GCATC	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	341, 484
BpuEI	CTTGAG	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 485
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	441, 485
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	414, 459
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	57, 224, 327
BshFI	GGCC	2 cut(s)	331, 445
BsiHKAI	GWGCWC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	441, 485
BsmAI	GTCTC	2 cut(s)	401, 416
BsnI	GGCC	2 cut(s)	331, 445
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	2 cut(s)	331, 445
BspCNI	CTCAG	2 cut(s)	413, 460
BspTNI	GGTCTC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	446
BssNI	GRCGYC	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	400, 468
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstMAI	GTCTC	2 cut(s)	401, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 337
BstNSI	RCATGY	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	57, 224, 327
BstV2I	GAAGAC	2 cut(s)	341, 484
BsuRI	GGCC	2 cut(s)	331, 445
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	283
CfoI	GCGC	1 cut(s)	388
CseI	GACGC	2 cut(s)	346, 478
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	400, 468
DraI	TTTAAA	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	401
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	1 cut(s)	310
FaiI	YATR	6 cut(s)	218, 240, 288, 308, 442, 536
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	46, 213, 341, 384
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	4 cut(s)	46, 213, 341, 384
FspBI	CTAG	2 cut(s)	138, 246
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	4 cut(s)	46, 213, 341, 384
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	331, 445
HgaI	GACGC	2 cut(s)	346, 478
HhaI	GCGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	517
HphI	GGTGA	3 cut(s)	11, 31, 202
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	320, 497
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	259, 445
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4V	TGCA	2 cut(s)	281, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 337
HpyF3I	CTNAG	2 cut(s)	400, 468
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	566
LpnPI	CCDG	6 cut(s)	55, 314, 329, 338, 353, 492
Lsp1109I	GCAGC	3 cut(s)	57, 224, 327
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	2 cut(s)	138, 246
MaeIII	GTNAC	1 cut(s)	514
MboII	GAAGA	4 cut(s)	28, 341, 346, 484
MhlI	GDGCHC	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	3 cut(s)	39, 44, 67
MseI	TTAA	2 cut(s)	311, 360
MslI	CAYNNNNRTG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	69, 337
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	47, 214, 342, 385
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	311, 360
SatI	GCNGC	4 cut(s)	46, 213, 341, 384
SchI	GAGTC	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	9 cut(s)	103, 115, 121, 217, 256, 287, 357, 406, 456
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SsiI	CCGC	1 cut(s)	383
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	2 cut(s)	138, 246
SstI	GAGCTC	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	2 cut(s)	164, 428
TauI	GCSGC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	311, 360
Tru9I	TTAA	2 cut(s)	311, 360
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	45, 212, 340
Tsp45I	GTSAC	1 cut(s)	514
TspRI	CASTG	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	441
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	2 cut(s)	138, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.