Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Forward (+)

54974492 .. 54980413

Gene Structure 5922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGGGGTAAGAGTGATCCTAGAGCTCGACGGCGGCCGAGCCGACAGCGGCGGATCGGAGATGCGGGTGGACTCGGTTCATGTGGAGACTATCGGCCCAAAGATTGATGCTGAAAATAAGTTACTTCTCTGCTGGAAAATTTGGGAAGTTGTTGAAGGGACCACCGCCGAAGGTCCAATCGGCGGCTGCGGCGACAAGGTTGCGAAGTTGGCTTATGCTTATGCGGCTATGGAGATGCAACGGATCCCTAGGCTCAAGGCATTGGACTGGTTGGGACATGTGGATGAAATCTGTACTTTATTAATCGCTCTGGCATTTTTGGTCGTCAAGCAAGTCTTTATGGAGCCTGAGATGGCATTCTTGGAAGCTGCACTCTGCGTTCTAGGTAAAGATAGTGAGGGTTCTAGTGGTACAAATGCTGTTTCGGGTTCGAGTTTTGATTTTGTTAGGGTAATGGTGAAGTGTGGAGTTGTTTTAGCAGCTATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTATGGTCAGTGCAAGCTATGGGGTTGTTGACAAGTGCATATTGATGTTCAGAAATGCTTGGCCGAAGACGCTGCTGGTTCTTCAGGTTTTTAAAGAGCAGGGTTTGATTTTGGCGGCGCTTTTGGGTCTCTCGGCTTTTTTCTCAATGGCAGAGACTTTGATTACCACACTATGGCCTTGGAGGGTGCGTGAGTTGCCTGAGAAAGAGCCTGAAAATGGTGTCTTCAGATTGCTTCGCAATGATGTGACTCATGTTGTCAATATTGGAGCAACTGCTTTAGTTACAAAGGCTGCAACAGCGATATTTGGTGAAGCTGGTGTTAGTGCAGCAACTGGAGTAATGACTGTTCTTATTTTGCTCCTCACCAAAATAACTCCCAAAAGTGTTGCTGTTCACAATCCCACAGAAGTTGCTGGGTTTGTGACATTGCCCTCGAATTCAATTGGGGCTAGTTGTGGTCAAGCTAGTATTGGCACAACTTCTGCATTGTTTCAATTGGGAACTTCCAGATGGTTTGTTACCGAGTTGGACTTGACGGAGGAGTTTGGTCAAATTGTTCCACGAGCCAAGCATCTGCTGGCTGTTCCTTCTTATCGCCTACACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

381

Amino Acids

40.9

Weight (kDa)

6.12

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	214 - 323	4.2e-15	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	708
AciI	CCGC	9 cut(s)	33, 48, 51, 64, 165, 183, 189, 224, 650
AclWI	GGATC	4 cut(s)	10, 61, 238, 251
AcoI	YGGCCR	2 cut(s)	34, 596
AcsI	RAATTY	2 cut(s)	138, 973
AcuI	CTGAAG	2 cut(s)	602, 745
AfaI	GTAC	2 cut(s)	295, 412
AfiI	CCNNNNNNNGG	3 cut(s)	182, 708, 752
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	155, 978, 1031
AluBI	AGCT	7 cut(s)	25, 368, 482, 521, 552, 851, 1001
AluI	AGCT	7 cut(s)	25, 368, 482, 521, 552, 851, 1001
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	3 cut(s)	80, 668, 683
AlwI	GGATC	4 cut(s)	10, 61, 238, 251
AlwNI	CAGNNNCTG	1 cut(s)	869
AoxI	GGCC	4 cut(s)	34, 94, 596, 710
ApeKI	GCWGC	6 cut(s)	186, 368, 479, 607, 827, 863
ApoI	RAATTY	2 cut(s)	138, 973
AseI	ATTAAT	1 cut(s)	302
AspA2I	CCTAGG	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	3 cut(s)	95, 159, 173
AsuHPI	GGTGA	3 cut(s)	469, 857, 892
AvaII	GGWCC	2 cut(s)	159, 173
AvrII	CCTAGG	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	1098
BbsI	GAAGAC	2 cut(s)	608, 751
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	6 cut(s)	173, 355, 491, 594, 814, 875
BccI	CCATC	2 cut(s)	346, 1041
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 589, 623
BcoDI	GTCTC	3 cut(s)	80, 668, 683
BfaI	CTAG	7 cut(s)	20, 249, 383, 405, 513, 987, 1002
BfoI	RGCGCY	1 cut(s)	656
BlnI	CCTAGG	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	159, 173
BmgT120I	GGNCC	3 cut(s)	95, 159, 173
BmiI	GGNNCC	3 cut(s)	160, 245, 345
BmsI	GCATC	4 cut(s)	51, 97, 225, 1117
BpiI	GAAGAC	2 cut(s)	608, 751
BpmI	CTGGAG	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	248, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 708, 752
Bse1I	ACTGG	2 cut(s)	272, 874
Bse3DI	GCAATG	2 cut(s)	781, 962
BseDI	CCNNGG	2 cut(s)	248, 713
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	3 cut(s)	182, 708, 752
BseMI	GCAATG	2 cut(s)	781, 962
BseMII	CTCAG	2 cut(s)	339, 726
BseNI	ACTGG	2 cut(s)	272, 874
BseRI	GAGGAG	2 cut(s)	887, 1091
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	6 cut(s)	173, 355, 491, 594, 814, 875
BseYI	CCCAGC	1 cut(s)	950
BsgI	GTGCAG	2 cut(s)	354, 882
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	4 cut(s)	36, 96, 598, 712
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	2 cut(s)	172, 288
BslI	CCNNNNNNNGG	3 cut(s)	182, 708, 752
BsmAI	GTCTC	3 cut(s)	80, 668, 683
BsmFI	GGGAC	2 cut(s)	172, 288
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	4 cut(s)	36, 96, 598, 712
Bso31I	GGTCTC	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	15, 53, 243
BspACI	CCGC	9 cut(s)	33, 48, 51, 64, 165, 183, 189, 224, 650
BspANI	GGCC	4 cut(s)	36, 96, 598, 712
BspCNI	CTCAG	2 cut(s)	340, 727
BspLI	GGNNCC	3 cut(s)	160, 245, 345
BspPI	GGATC	4 cut(s)	10, 61, 238, 251
BspTNI	GGTCTC	1 cut(s)	668
BsrDI	GCAATG	2 cut(s)	781, 962
BsrI	ACTGG	2 cut(s)	272, 874
BssECI	CCNNGG	2 cut(s)	248, 713
BssMI	GATC	3 cut(s)	15, 53, 243
BssSI	CACGAG	1 cut(s)	1098
BssT1I	CCWWGG	2 cut(s)	248, 713
Bst2BI	CACGAG	1 cut(s)	1098
Bst4CI	ACNGT	1 cut(s)	883
BstC8I	GCNNGC	2 cut(s)	550, 1116
BstDEI	CTNAG	2 cut(s)	348, 735
BstF5I	GGATG	1 cut(s)	289
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	3 cut(s)	18, 56, 246
BstMAI	GTCTC	3 cut(s)	80, 668, 683
BstMBI	GATC	3 cut(s)	15, 53, 243
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	6 cut(s)	189, 209, 224, 604, 730, 833
BstNSI	RCATGY	1 cut(s)	281
BstV1I	GCAGC	6 cut(s)	173, 355, 491, 594, 814, 875
BstV2I	GAAGAC	2 cut(s)	608, 751
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BstZI	CGGCCG	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	36, 96, 598, 712
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	550, 1116
CaiI	CAGNNNCTG	1 cut(s)	869
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	3 cut(s)	95, 159, 173
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	294, 411
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviAII	CATG	3 cut(s)	80, 278, 788
CviQI	GTAC	2 cut(s)	294, 411
DdeI	CTNAG	2 cut(s)	348, 735
DpnI	GATC	3 cut(s)	17, 55, 245
DpnII	GATC	3 cut(s)	15, 53, 243
DraI	TTTAAA	1 cut(s)	628
EaeI	YGGCCR	2 cut(s)	34, 596
EagI	CGGCCG	1 cut(s)	34
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	25
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	248, 713
Eco24I	GRGCYC	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	159, 173
Eco52I	CGGCCG	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	602, 745
EcoICRI	GAGCTC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	973
EcoT14I	CCWWGG	2 cut(s)	248, 713
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	248, 713
FaeI	CATG	3 cut(s)	83, 281, 791
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	2 cut(s)	172, 288
FatI	CATG	3 cut(s)	79, 277, 787
FauI	CCCGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	27
FspBI	CTAG	7 cut(s)	20, 249, 383, 405, 513, 987, 1002
GlaI	GCGC	1 cut(s)	654
GsaI	CCCAGC	1 cut(s)	954
GsuI	CTGGAG	1 cut(s)	891
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	4 cut(s)	36, 96, 598, 712
HgaI	GACGC	1 cut(s)	613
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	83, 281, 791
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	2 cut(s)	71, 784
HphI	GGTGA	3 cut(s)	469, 857, 892
Hpy166II	GTNNAC	3 cut(s)	70, 565, 931
Hpy188I	TCNGA	3 cut(s)	58, 587, 764
Hpy188III	TCNNGA	1 cut(s)	1044
Hpy8I	GTNNAC	3 cut(s)	70, 565, 931
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	149, 164, 1134
HpyCH4III	ACNGT	1 cut(s)	883
HpyCH4V	TGCA	7 cut(s)	238, 371, 548, 573, 830, 863, 1022
HpyF10VI	GCNNNNNNNGC	6 cut(s)	189, 209, 224, 604, 730, 833
HpyF3I	CTNAG	2 cut(s)	348, 735
Hsp92II	CATG	3 cut(s)	83, 281, 791
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	3 cut(s)	15, 53, 243
LmnI	GCTCC	3 cut(s)	343, 803, 900
Lsp1109I	GCAGC	6 cut(s)	173, 355, 491, 594, 814, 875
LweI	GCATC	4 cut(s)	51, 97, 225, 1117
MaeI	CTAG	7 cut(s)	20, 249, 383, 405, 513, 987, 1002
MaeIII	GTNAC	5 cut(s)	120, 781, 817, 958, 1054
MalI	GATC	3 cut(s)	17, 55, 245
MboI	GATC	3 cut(s)	15, 53, 243
MboII	GAAGA	3 cut(s)	608, 613, 751
MfeI	CAATTG	2 cut(s)	978, 1031
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	5 cut(s)	138, 973, 978, 1031, 1089
MlyI	GAGTC	2 cut(s)	65, 778
MmeI	TCCRAC	1 cut(s)	1044
MnlI	CCTC	6 cut(s)	391, 526, 711, 908, 979, 1069
MseI	TTAA	2 cut(s)	302, 627
MslI	CAYNNNNRTG	2 cut(s)	282, 578
MspA1I	CMGCKG	1 cut(s)	48
MunI	CAATTG	2 cut(s)	978, 1031
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	6 cut(s)	189, 209, 224, 604, 730, 833
NdeII	GATC	3 cut(s)	15, 53, 243
NlaIII	CATG	3 cut(s)	83, 281, 791
NlaIV	GGNNCC	3 cut(s)	160, 245, 345
NmeAIII	GCCGAG	2 cut(s)	62, 647
NmuCI	GTSAC	2 cut(s)	781, 958
NspI	RCATGY	1 cut(s)	281
PciI	ACATGT	1 cut(s)	277
PctI	GAATGC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	708
PleI	GAGTC	2 cut(s)	65, 778
PpsI	GAGTC	2 cut(s)	65, 778
PscI	ACATGT	1 cut(s)	277
PshBI	ATTAAT	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	950
PspN4I	GGNNCC	3 cut(s)	160, 245, 345
PspPI	GGNCC	3 cut(s)	95, 159, 173
PsrI	GAACNNNNNNTAC	2 cut(s)	867, 899
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	2 cut(s)	295, 412
RsaNI	GTAC	2 cut(s)	294, 411
RseI	CAYNNNNRTG	2 cut(s)	282, 578
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	302, 627
Sau3AI	GATC	3 cut(s)	15, 53, 243
Sau96I	GGNCC	3 cut(s)	95, 159, 173
SchI	GAGTC	2 cut(s)	65, 778
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	4 cut(s)	51, 97, 225, 1117
SinI	GGWCC	2 cut(s)	159, 173
SmiMI	CAYNNNNRTG	2 cut(s)	282, 578
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	138, 973, 978, 1031, 1089
SsiI	CCGC	9 cut(s)	33, 48, 51, 64, 165, 183, 189, 224, 650
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	7 cut(s)	20, 249, 383, 405, 513, 987, 1002
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	248, 713
TaaI	ACNGT	1 cut(s)	883
TaqI	TCGA	3 cut(s)	27, 431, 971
TasI	AATT	5 cut(s)	138, 973, 978, 1031, 1089
TatI	WGTACW	1 cut(s)	293
TauI	GCSGC	6 cut(s)	36, 51, 186, 192, 227, 653
Tru1I	TTAA	2 cut(s)	302, 627
Tru9I	TTAA	2 cut(s)	302, 627
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	2 cut(s)	781, 958
TseI	GCWGC	6 cut(s)	186, 368, 479, 607, 827, 863
Tsp45I	GTSAC	2 cut(s)	781, 958
TspDTI	ATGAA	2 cut(s)	68, 300
TspGWI	ACGGA	2 cut(s)	256, 1088
TspRI	CASTG	1 cut(s)	550
Van91I	CCANNNNNTGG	1 cut(s)	708
VpaK11BI	GGWCC	2 cut(s)	159, 173
VspI	ATTAAT	1 cut(s)	302
XapI	RAATTY	2 cut(s)	138, 973
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1111
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	7 cut(s)	20, 249, 383, 405, 513, 987, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.