Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

37738594 .. 37739361

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCAGAGACTTCGATTACCACGCTATGGCCTTGGAAGGTGCGTGAGTTAGCTGAGAAAGAGCCTGAAAATGGCGTCTTCGGATTGCTTCGCAATGATGTGACTCGGTTCTTGGCAACCATACTTGTTGGCACAACTGTTGTCAATATTGGAGCAACTGCTTTAGTTACAGAGGCTGCAACAGCGATATTTGGTGAAGCTGGTGTTAGTGCAGCAACTGGAGTAATGACTGTATGTCTCATTTTCCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

84

Amino Acids

8.82

Weight (kDa)

4.64

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	1 - 81	9e-15	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	27, 71
AhdI	GACNNNNNGTC	1 cut(s)	234
AluBI	AGCT	2 cut(s)	53, 200
AluI	AGCT	2 cut(s)	53, 200
Alw26I	GTCTC	2 cut(s)	2, 242
AlwNI	CAGNNNCTG	2 cut(s)	176, 218
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	176, 212
AsuHPI	GGTGA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	163, 224
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	2, 242
BisI	GCNGC	2 cut(s)	177, 213
BlsI	GCNGC	2 cut(s)	178, 214
BmeRI	GACNNNNNGTC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 71
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	27, 71
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	163, 224
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	27, 71
BsmAI	GTCTC	2 cut(s)	2, 242
BsnI	GGCC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	139, 232
BstACI	GRCGYC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	2, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	163, 224
BstV2I	GAAGAC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	31
CaiI	CAGNNNCTG	2 cut(s)	176, 218
CseI	GACGC	1 cut(s)	64
CviJI	RGCY	5 cut(s)	31, 53, 64, 176, 200
CviKI_1	RGCY	5 cut(s)	31, 53, 64, 176, 200
DdeI	CTNAG	1 cut(s)	54
DriI	GACNNNNNGTC	1 cut(s)	234
Eam1105I	GACNNNNNGTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaiI	YATR	3 cut(s)	28, 122, 235
Fnu4HI	GCNGC	2 cut(s)	177, 213
Fsp4HI	GCNGC	2 cut(s)	177, 213
GluI	GCNGC	2 cut(s)	177, 213
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	31
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	75
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	139, 232
HpyCH4V	TGCA	2 cut(s)	179, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	3 cut(s)	78, 186, 204
Lsp1109I	GCAGC	2 cut(s)	163, 224
MaeIII	GTNAC	2 cut(s)	100, 166
MboII	GAAGA	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	178, 214
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PstNI	CAGNNNCTG	2 cut(s)	176, 218
SatI	GCNGC	2 cut(s)	177, 213
SchI	GAGTC	1 cut(s)	97
SetI	ASST	3 cut(s)	42, 55, 202
SgeI	CNNG	9 cut(s)	34, 45, 56, 77, 117, 124, 137, 213, 231
SspI	AATATT	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	139, 232
TaqI	TCGA	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	176, 212
Tsp45I	GTSAC	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.