Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

37554840 .. 37557550

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCCTTGAGTCTTCAATTCCAAGCCCGCCCAGATTCATTTCTGGTTCGAAATCATTGGGTTTCTTGTATTACCATAAGCAGAAGAATTTCCCTACCAATGCTTCGGTGCAAAGTAATCGATACCCATTTCGATTGGTGTCGAATTGCATTGGCAGTAGTGATTTTCGGAGGTTCTTAGGTCCAAGATACGAGGGAGTTGACTTGTTTGCTATTAGAGCTCGTTTGAGAGCTGGAGGTAAAGATAGTGAGAGTTCTAGTGGTACAACTGCTGTTTCGGGCTCGAGTTTTGATTTTGTTAGGGTAATGGTGAAGTGTGGAGTTGTTTTAGCAACAATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGCTATGGGGTTGTTGGCAAGTGCATATTCTTCAGCGCTTTTGGGGTTCTCGGCTTTTTTTTCTCAATGGCAGAGACTTCGATTACCGCGCAATGGCCTTGGAAGGTGCGTGAGTTGGCTAAGAAAGAGCCTGAAAATGGTGTCTTCAGATTGCTTCGCAATGATGTGACTGGTTCTTATTTTGTTCCTCACCGAAATAACTCCCAAAAGTGTTTCTGTTCACAATCCCGGAGAAGTAGCTACGTTTCTGACGAATTCTGCCCAAAAGGTTTGAAGCGAGGGAGTAATATAGACCTGAGGCGAAACCACTTTCAGCTTATTCCATTTGGGTCGGGCCGCAGATGTTGCCCTGGAATTCAATTGGGGCTACTTGTGGTCGAGCTAGTATTGGCACAACTTCTGCATTGTTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

273

Amino Acids

30.16

Weight (kDa)

9.76

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	234 - 271	1.2e-06	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	491
AciI	CCGC	3 cut(s)	29, 489, 739
AcsI	RAATTY	3 cut(s)	88, 656, 756
AcuI	CTGAAG	2 cut(s)	418, 532
AfaI	GTAC	1 cut(s)	265
AfeI	AGCGCT	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	495, 539
AgsI	TTSAA	3 cut(s)	18, 676, 761
AjnI	CCWGG	1 cut(s)	751
AluBI	AGCT	7 cut(s)	221, 233, 374, 405, 642, 718, 784
AluI	AGCT	7 cut(s)	221, 233, 374, 405, 642, 718, 784
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	283
Aor51HI	AGCGCT	1 cut(s)	439
AoxI	GGCC	3 cut(s)	3, 497, 736
ApoI	RAATTY	3 cut(s)	88, 656, 756
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	440, 493
AspS9I	GGNCC	3 cut(s)	4, 182, 736
AsuC2I	CCSGG	1 cut(s)	631
AsuHPI	GGTGA	2 cut(s)	322, 584
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	698
BanII	GRGCYC	2 cut(s)	223, 284
BbsI	GAAGAC	2 cut(s)	6, 538
Bbv12I	GWGCWC	1 cut(s)	223
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 462, 496
BciT130I	CCWGG	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	3 cut(s)	258, 366, 785
BfoI	RGCGCY	1 cut(s)	441
BisI	GCNGC	1 cut(s)	739
BlsI	GCNGC	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	631, 753
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	4, 182, 736
BmrFI	CCNGG	2 cut(s)	631, 753
BpiI	GAAGAC	2 cut(s)	6, 538
BpmI	CTGGAG	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	631
Bsa29I	ATCGAT	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	500, 751
Bsc4I	CCNNNNNNNGG	2 cut(s)	495, 539
Bse1I	ACTGG	1 cut(s)	577
Bse21I	CCTNAGG	1 cut(s)	698
Bse3DI	GCAATG	2 cut(s)	500, 568
BseBI	CCWGG	1 cut(s)	753
BseCI	ATCGAT	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	500, 751
BseLI	CCNNNNNNNGG	2 cut(s)	495, 539
BseMI	GCAATG	2 cut(s)	500, 568
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	5, 499, 738
BshVI	ATCGAT	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	631
BslI	CCNNNNNNNGG	2 cut(s)	495, 539
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	5, 499, 738
BsoBI	CYCGRG	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	223, 284
BspACI	CCGC	3 cut(s)	29, 489, 739
BspANI	GGCC	3 cut(s)	5, 499, 738
BspCNI	CTCAG	1 cut(s)	690
BspDI	ATCGAT	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	50
BsrDI	GCAATG	2 cut(s)	500, 568
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	2 cut(s)	500, 751
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	753
BstAPI	GCANNNNNTGC	1 cut(s)	747
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	29, 403
BstDEI	CTNAG	3 cut(s)	178, 522, 698
BstFNI	CGCG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	440, 493
BstMAI	GTCTC	1 cut(s)	470
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 747
BstNI	CCWGG	1 cut(s)	753
BstSCI	CCNGG	2 cut(s)	629, 751
BstUI	CGCG	1 cut(s)	491
BstV2I	GAAGAC	2 cut(s)	6, 538
Bsu15I	ATCGAT	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	698
BsuRI	GGCC	3 cut(s)	5, 499, 738
BsuTUI	ATCGAT	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	29, 403
CfoI	GCGC	2 cut(s)	440, 493
Cfr13I	GGNCC	3 cut(s)	4, 182, 736
ClaI	ATCGAT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	264
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	3 cut(s)	178, 522, 698
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	500
Eco24I	GRGCYC	2 cut(s)	223, 284
Eco47I	GGWCC	1 cut(s)	182
Eco47III	AGCGCT	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	418, 532
Eco81I	CCTNAGG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	221
EcoRI	GAATTC	2 cut(s)	656, 756
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	500
EcoT38I	GRGCYC	2 cut(s)	223, 284
ErhI	CCWWGG	1 cut(s)	500
FaiI	YATR	5 cut(s)	78, 360, 408, 428, 692
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	739
FriOI	GRGCYC	2 cut(s)	223, 284
Fsp4HI	GCNGC	1 cut(s)	739
FspBI	CTAG	3 cut(s)	258, 366, 785
GlaI	GCGC	2 cut(s)	439, 492
GluI	GCNGC	1 cut(s)	739
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	3 cut(s)	5, 499, 738
HapII	CCGG	1 cut(s)	631
HhaI	GCGC	2 cut(s)	440, 493
Hin6I	GCGC	2 cut(s)	438, 491
HinP1I	GCGC	2 cut(s)	438, 491
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	11, 36
HpaII	CCGG	1 cut(s)	631
HphI	GGTGA	2 cut(s)	322, 584
Hpy166II	GTNNAC	2 cut(s)	202, 623
Hpy188I	TCNGA	3 cut(s)	171, 551, 652
Hpy8I	GTNNAC	2 cut(s)	202, 623
HpyAV	CCTTC	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	5 cut(s)	112, 150, 401, 426, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 747
HpyF3I	CTNAG	3 cut(s)	178, 522, 698
HpySE526I	ACGT	1 cut(s)	645
HspAI	GCGC	2 cut(s)	438, 491
LpnPI	CCDG	9 cut(s)	30, 46, 219, 546, 558, 644, 710, 738, 765
MaeI	CTAG	3 cut(s)	258, 366, 785
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	568
MboII	GAAGA	4 cut(s)	6, 97, 424, 538
MfeI	CAATTG	1 cut(s)	761
MhlI	GDGCHC	2 cut(s)	223, 284
MluCI	AATT	6 cut(s)	18, 88, 145, 656, 756, 761
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	7 cut(s)	165, 187, 230, 379, 600, 674, 693
MroXI	GAANNNNTTC	1 cut(s)	89
MspI	CCGG	1 cut(s)	631
MspR9I	CCNGG	2 cut(s)	631, 753
MunI	CAATTG	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	753
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	218, 747
NciI	CCSGG	1 cut(s)	631
NmeAIII	GCCGAG	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	36
PfoI	TCCNGGA	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	740
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspPI	GGNCC	3 cut(s)	4, 182, 736
PspXI	VCTCGAGB	1 cut(s)	283
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	223
SatI	GCNGC	1 cut(s)	739
Sau96I	GGNCC	3 cut(s)	4, 182, 736
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	631, 753
SduI	GDGCHC	2 cut(s)	223, 284
Sfr274I	CTCGAG	1 cut(s)	283
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	283
SmlI	CTYRAG	2 cut(s)	8, 283
SmoI	CTYRAG	2 cut(s)	8, 283
Sse9I	AATT	6 cut(s)	18, 88, 145, 656, 756, 761
SsiI	CCGC	3 cut(s)	29, 489, 739
SspMI	CTAG	3 cut(s)	258, 366, 785
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	2 cut(s)	629, 751
StyI	CCWWGG	1 cut(s)	500
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	8 cut(s)	50, 121, 133, 143, 284, 482, 780, 813
TasI	AATT	6 cut(s)	18, 88, 145, 656, 756, 761
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	3 cut(s)	88, 656, 756
XhoI	CTCGAG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	3 cut(s)	258, 366, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.