Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

37632842 .. 37634756

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTGAAGTGTGGAGTTATTTTAGCAACCATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGAAGGGTGTGGTCAAAGCAAGCTATGGGATTGTTGACAAGTGCAAGTTAATGTTCAGAAATGCTTGGCCGAAGATGCTGCTGGTTCTTCAGGTTTTTAAAGAGCAGGGTTTGATTTTGGCGGCGCTTTTGGGTCTCTCGGCTTTTTTCTCAATGCAGAGACTTCGATTACCACGCTATGGCCTTGGAAGAATCTTGAACGAAGATTACTTAATTGATATTTATTTGTGTCAGGTGCATGAGTTGGCTGAGAAAGAGCCTGAAAATGGCGTCTTTGGATTGCTTCACAATGATGTGACACGGTTCTTGGCAACCATACTTATTGGCACAACTGTTGTCAATATTGGAGCACCTGCTTTAGTTACAGAGGCTGCAACAGCGATATTTGGCGAAGCTGGCGTTAGTGCAGCAACTGGAGTAATGACTGTTCTTATTTTGCTCCTCAGCGAAATAACTCCCAAAAGTGTTGCTGTTCACAATCCCACAGAAGTTGCTGTTCACAATCCCACAAAAGTTGCTAGGTTTGTGGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

204

Amino Acids

21.93

Weight (kDa)

9.12

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	63 - 191	7.7e-20	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	254
AciI	CCGC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	254, 341
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	3 cut(s)	68, 99, 470
AluI	AGCT	3 cut(s)	68, 99, 470
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	2 cut(s)	215, 229
AlwNI	CAGNNNCTG	2 cut(s)	446, 488
AoxI	GGCC	2 cut(s)	143, 256
ApeKI	GCWGC	3 cut(s)	154, 446, 482
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	427
BbvCI	CCTCAGC	1 cut(s)	518
BbvI	GCAGC	3 cut(s)	141, 433, 494
BcgI	CGANNNNNNTGC	4 cut(s)	136, 170, 221, 255
BcoDI	GTCTC	2 cut(s)	215, 229
BfaI	CTAG	2 cut(s)	60, 594
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	4 cut(s)	155, 198, 447, 483
BlsI	GCNGC	4 cut(s)	156, 199, 448, 484
BmsI	GCATC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	30, 259
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 341
Bse1I	ACTGG	1 cut(s)	493
BseDI	CCNNGG	2 cut(s)	30, 259
BseLI	CCNNNNNNNGG	2 cut(s)	254, 341
BseMII	CTCAG	2 cut(s)	315, 532
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	141, 433, 494
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	145, 258
BsiHKAI	GWGCWC	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	254, 341
BsmAI	GTCTC	2 cut(s)	215, 229
BsnI	GGCC	2 cut(s)	145, 258
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	145, 258
BspCNI	CTCAG	2 cut(s)	316, 531
BspMI	ACCTGC	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	30, 259
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	30, 259
Bst4CI	ACNGT	3 cut(s)	378, 409, 502
BstACI	GRCGYC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	97, 472
BstDEI	CTNAG	2 cut(s)	324, 518
BstDSI	CCRYGG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	215, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 452, 471
BstV1I	GCAGC	3 cut(s)	141, 433, 494
BsuRI	GGCC	2 cut(s)	145, 258
BtgI	CCRYGG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	97, 472
CaiI	CAGNNNCTG	2 cut(s)	446, 488
CfoI	GCGC	1 cut(s)	202
CseI	GACGC	1 cut(s)	334
CspCI	CAANNNNNGTGG	4 cut(s)	547, 571, 582, 606
CviAII	CATG	2 cut(s)	31, 314
CviJI	RGCY	9 cut(s)	68, 99, 145, 218, 258, 323, 334, 446, 470
CviKI_1	RGCY	9 cut(s)	68, 99, 145, 218, 258, 323, 334, 446, 470
DdeI	CTNAG	2 cut(s)	324, 518
DraI	TTTAAA	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	30, 259
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	30, 259
ErhI	CCWWGG	2 cut(s)	30, 259
FaeI	CATG	2 cut(s)	34, 317
FaiI	YATR	6 cut(s)	32, 54, 102, 255, 315, 392
FatI	CATG	2 cut(s)	30, 313
Fnu4HI	GCNGC	4 cut(s)	155, 198, 447, 483
Fsp4HI	GCNGC	4 cut(s)	155, 198, 447, 483
FspBI	CTAG	2 cut(s)	60, 594
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	4 cut(s)	155, 198, 447, 483
GsuI	CTGGAG	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	145, 258
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	34, 317
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	267
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	112, 550, 574
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	3 cut(s)	112, 550, 574
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	378, 409, 502
HpyCH4V	TGCA	5 cut(s)	120, 232, 313, 449, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 452, 471
HpyF3I	CTNAG	2 cut(s)	324, 518
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	34, 317
HspAI	GCGC	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	422, 519
LpnPI	CCDG	8 cut(s)	143, 152, 167, 293, 348, 441, 456, 474
Lsp1109I	GCAGC	3 cut(s)	141, 433, 494
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	60, 594
MaeIII	GTNAC	2 cut(s)	370, 436
MboII	GAAGA	4 cut(s)	155, 160, 276, 290
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	1 cut(s)	288
MnlI	CCTC	2 cut(s)	436, 527
MseI	TTAA	3 cut(s)	125, 174, 287
MslI	CAYNNNNRTG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	151, 452, 471
NcoI	CCATGG	1 cut(s)	30
NlaIII	CATG	2 cut(s)	34, 317
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	156, 199, 448, 484
PsrI	GAACNNNNNNTAC	4 cut(s)	266, 298, 486, 518
PstNI	CAGNNNCTG	2 cut(s)	446, 488
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	125, 174, 287
SatI	GCNGC	4 cut(s)	155, 198, 447, 483
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	7 cut(s)	70, 101, 171, 312, 430, 472, 599
SfaNI	GCATC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	2 cut(s)	60, 594
StyI	CCWWGG	2 cut(s)	30, 259
TaaI	ACNGT	3 cut(s)	378, 409, 502
TaqI	TCGA	1 cut(s)	241
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	3 cut(s)	125, 174, 287
Tru9I	TTAA	3 cut(s)	125, 174, 287
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	3 cut(s)	154, 446, 482
Tsp45I	GTSAC	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	254
XspI	CTAG	2 cut(s)	60, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.