Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008148.1

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

214319 .. 215075

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008148.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggcagagacttcgattaccacgctatggccttggaaggtgcgtgagttggctaagaaagagcctgaaaatggtgtcttcggattgcttcgcaatgatgtgactcggttcttgacaaccatactcattggcacaactgttgtcaatattggagcaactgctttagttacagaggctgcaacaatgatatttggtgaagttggtgttattgcagcaactggagtaatgactgtatgtctcattttccctgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

84

Amino Acids

8.98

Weight (kDa)

5.19

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	27, 71
AhdI	GACNNNNNGTC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	2, 242
AlwNI	CAGNNNCTG	2 cut(s)	176, 218
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	176, 212
AsuHPI	GGTGA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	163, 224
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	2, 242
BisI	GCNGC	2 cut(s)	177, 213
BlsI	GCNGC	2 cut(s)	178, 214
BmeRI	GACNNNNNGTC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 71
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	27, 71
BseMI	GCAATG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	163, 224
BshFI	GGCC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	27, 71
BsmAI	GTCTC	2 cut(s)	2, 242
BsnI	GGCC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	139, 232
BstDEI	CTNAG	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	2, 242
BstV1I	GCAGC	2 cut(s)	163, 224
BstV2I	GAAGAC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	31
CaiI	CAGNNNCTG	2 cut(s)	176, 218
CviJI	RGCY	4 cut(s)	31, 53, 64, 176
CviKI_1	RGCY	4 cut(s)	31, 53, 64, 176
DdeI	CTNAG	1 cut(s)	54
DriI	GACNNNNNGTC	1 cut(s)	234
Eam1105I	GACNNNNNGTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaiI	YATR	3 cut(s)	28, 122, 235
Fnu4HI	GCNGC	2 cut(s)	177, 213
Fsp4HI	GCNGC	2 cut(s)	177, 213
GluI	GCNGC	2 cut(s)	177, 213
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	139, 232
HpyCH4V	TGCA	2 cut(s)	179, 212
HpyF3I	CTNAG	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	2 cut(s)	78, 204
Lsp1109I	GCAGC	2 cut(s)	163, 224
MaeIII	GTNAC	2 cut(s)	100, 166
MboII	GAAGA	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	178, 214
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PstNI	CAGNNNCTG	2 cut(s)	176, 218
SatI	GCNGC	2 cut(s)	177, 213
SchI	GAGTC	1 cut(s)	97
SetI	ASST	1 cut(s)	42
SgeI	CNNG	7 cut(s)	34, 45, 56, 77, 117, 124, 231
SspI	AATATT	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	139, 232
TaqI	TCGA	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	176, 212
Tsp45I	GTSAC	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.