Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Forward (+)

10756384 .. 10757243

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGCTATGGGGTTGTTGACAGGTGCATATTGATGTTCAGAAATGCTTGGCCGAAGAAGCTATGGCCTTGGAAGGTGCGTGAGTTGGCTGAGAAAGAGCCTGAAAATGGTATCTTCAGATTGCTTCGCAATGATGTGACTCGGTTCTTGACAACCATACTTATTGGCACAACTGTTGTCAATATTGGTGCAACTGCTTTAGTTACAGAGGCTGCAACAGCTATATTTGGTGAAGCTGGTGTTAGTGCAGCAACTGGAGTAATGACTGTATGTCTCATTTCCCCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

117

Amino Acids

12.65

Weight (kDa)

8.99

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	42 - 113	1e-11	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	170
AhdI	GACNNNNNGTC	1 cut(s)	333
AluBI	AGCT	5 cut(s)	38, 69, 124, 284, 299
AluI	AGCT	5 cut(s)	38, 69, 124, 284, 299
Alw26I	GTCTC	1 cut(s)	341
AlwNI	CAGNNNCTG	2 cut(s)	275, 317
AoxI	GGCC	2 cut(s)	113, 128
ApeKI	GCWGC	2 cut(s)	275, 311
AsuHPI	GGTGA	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	262, 323
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	30
BisI	GCNGC	2 cut(s)	276, 312
BlsI	GCNGC	2 cut(s)	277, 313
BmeRI	GACNNNNNGTC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	262, 323
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	115, 130
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	115, 130
BspANI	GGCC	2 cut(s)	115, 130
BspCNI	CTCAG	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	238, 331
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 281
BstV1I	GCAGC	2 cut(s)	262, 323
BsuRI	GGCC	2 cut(s)	115, 130
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	2 cut(s)	275, 317
DdeI	CTNAG	1 cut(s)	153
DriI	GACNNNNNGTC	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	113
Eam1105I	GACNNNNNGTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaiI	YATR	7 cut(s)	24, 72, 92, 127, 221, 287, 334
Fnu4HI	GCNGC	2 cut(s)	276, 312
Fsp4HI	GCNGC	2 cut(s)	276, 312
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	2 cut(s)	276, 312
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	115, 130
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	202
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	104, 182
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	238, 331
HpyCH4V	TGCA	5 cut(s)	65, 90, 254, 278, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 281
HpyF3I	CTNAG	1 cut(s)	153
LpnPI	CCDG	4 cut(s)	70, 177, 285, 303
Lsp1109I	GCAGC	2 cut(s)	262, 323
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	199, 265
MboII	GAAGA	2 cut(s)	130, 169
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	43, 265
MslI	CAYNNNNRTG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	121, 281
NmuCI	GTSAC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	277, 313
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PstNI	CAGNNNCTG	2 cut(s)	275, 317
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	2 cut(s)	276, 312
SchI	GAGTC	1 cut(s)	196
SetI	ASST	7 cut(s)	40, 71, 89, 126, 141, 286, 301
SmiMI	CAYNNNNRTG	1 cut(s)	95
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	238, 331
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	275, 311
Tsp45I	GTSAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.