Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Forward (+)

55052273 .. 55059077

Gene Structure 6805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAGAGACTTCGATTACCACGCTATGGCCTTGGAAGGTGCGTGAGTTTGCTGAGAAAGTGCCTGAAAATGGCGTCTTCGAATTGCTTCACAATGATGTGACACGGTTCTTGGCAACCATACTTATTGGCACAACTGTGGTCAATATTGGAGCACCTACTTTAGTTACAGAGGCTCCAACAGCGATATTTGGTGAAGCTGGTGTTAGTGCAGCAACTGGAGTAATGACCGTTCTTATTTTGCTCCTCAGCGAAATAACTCCCAGAAGTGTTGCTGTTCACAATCCCACAGAAGTTGCTAGGTTTGTGTTGGTGATGTTGTCGTTTGGAGATACCAGTCAAAAAGCAAATGGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

119

Amino Acids

12.75

Weight (kDa)

5.22

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	1 - 109	1.9e-23	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	27, 71
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	29, 352
ApeKI	GCWGC	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	206, 325
AsuII	TTCGAA	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	2 cut(s)	300, 358
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 71
Bse1I	ACTGG	2 cut(s)	223, 336
BseDI	CCNNGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	27, 71
BseMII	CTCAG	2 cut(s)	45, 262
BseNI	ACTGG	2 cut(s)	223, 336
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	31, 354
BsiHKAI	GWGCWC	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	27, 71
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	31, 354
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	31, 354
BspCNI	CTCAG	2 cut(s)	46, 261
BspLI	GGNNCC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	223, 336
BssECI	CCNNGG	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	3 cut(s)	108, 139, 232
BstACI	GRCGYC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	54, 248
BstMAI	GTCTC	1 cut(s)	2
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	31, 354
CaiI	CAGNNNCTG	1 cut(s)	218
CseI	GACGC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviJI	RGCY	4 cut(s)	31, 176, 200, 354
CviKI_1	RGCY	4 cut(s)	31, 176, 200, 354
DdeI	CTNAG	2 cut(s)	54, 248
EaeI	YGGCCR	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaiI	YATR	2 cut(s)	28, 122
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	300, 358
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	31, 354
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	75
HphI	GGTGA	2 cut(s)	206, 325
Hpy166II	GTNNAC	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	3 cut(s)	108, 139, 232
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	54, 248
Hsp92I	GRCGYC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	152, 181, 249
LpnPI	CCDG	5 cut(s)	78, 186, 204, 277, 349
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	300, 358
MaeIII	GTNAC	2 cut(s)	100, 166
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	2 cut(s)	166, 257
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	96, 137
Msp20I	TGGCCA	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	81
OliI	CACNNNNGTG	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	216, 248
PstNI	CAGNNNCTG	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	96, 137
SatI	GCNGC	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	4 cut(s)	42, 160, 202, 305
SfuI	TTCGAA	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	96, 137
Sse9I	AATT	1 cut(s)	83
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	2 cut(s)	300, 358
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	3 cut(s)	108, 139, 232
TaqI	TCGA	2 cut(s)	14, 81
TasI	AATT	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	2 cut(s)	300, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.