Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000493.1

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Forward (+)

158944 .. 159596

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000493.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgatgggagcagggtggctccaggagtttgtgtgggtcccgcagggccacttcggattccagggtggaatccggggcggcgattttgggaggttcttaggtccaagatgcgaaggagttgacttgtttgctaatagagctcgtttgagagctgtaggtaaagatagtgagagttttagtggtacaaatgctgtttcgggttcgagttttgattttgttagggtaatggtgaagtgtggagtcgttttagcagctatggtttgtggggttttggtgtatggggctaggagagcttttgctgtggagggtgtggtcaatgcaagctatggggttgttgacaagtgcatgttgatgttcagaaatgcttggccgaagacggtgctagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

129

Amino Acids

13.94

Weight (kDa)

9.13

Isoelectric Point (pI)

22.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 78
AcoI	YGGCCR	1 cut(s)	368
AfaI	GTAC	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	21, 60
AluBI	AGCT	5 cut(s)	140, 152, 254, 293, 324
AluI	AGCT	5 cut(s)	140, 152, 254, 293, 324
Alw21I	GWGCWC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	46, 368
ApeKI	GCWGC	1 cut(s)	251
AspS9I	GGNCC	3 cut(s)	37, 46, 101
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	37, 101
BanII	GRGCYC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	263
BcgI	CGANNNNNNTGC	1 cut(s)	361
BciT130I	CCWGG	2 cut(s)	23, 62
BcnI	CCSGG	1 cut(s)	74
BfaI	CTAG	2 cut(s)	285, 383
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	2 cut(s)	79, 252
BlsI	GCNGC	2 cut(s)	80, 253
Bme1390I	CCNGG	3 cut(s)	23, 62, 74
Bme18I	GGWCC	2 cut(s)	37, 101
BmgT120I	GGNCC	3 cut(s)	37, 46, 101
BmiI	GGNNCC	3 cut(s)	20, 38, 39
BmrFI	CCNGG	3 cut(s)	23, 62, 74
BmsI	GCATC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	61, 73
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
BseBI	CCWGG	2 cut(s)	23, 62
BseDI	CCNNGG	2 cut(s)	61, 73
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	2 cut(s)	48, 370
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	48, 370
Bsp1286I	GDGCHC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	41, 78
BspANI	GGCC	2 cut(s)	48, 370
BspLI	GGNNCC	3 cut(s)	20, 38, 39
BssECI	CCNNGG	2 cut(s)	61, 73
Bst2UI	CCWGG	2 cut(s)	23, 62
Bst4CI	ACNGT	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 290
BstNI	CCWGG	2 cut(s)	23, 62
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	3 cut(s)	21, 60, 72
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	48, 370
Cac8I	GCNNGC	1 cut(s)	322
Cfr13I	GGNCC	3 cut(s)	37, 46, 101
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	9 cut(s)	19, 48, 140, 152, 254, 284, 293, 324, 370
CviKI_1	RGCY	9 cut(s)	19, 48, 140, 152, 254, 284, 293, 324, 370
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco47I	GGWCC	2 cut(s)	37, 101
Eco53kI	GAGCTC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	21, 60
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	1 cut(s)	349
FaiI	YATR	4 cut(s)	257, 279, 327, 347
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	79, 252
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	79, 252
FspBI	CTAG	2 cut(s)	285, 383
GluI	GCNGC	2 cut(s)	79, 252
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	48, 370
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	349
HincII	GTYRAC	2 cut(s)	121, 337
HindII	GTYRAC	2 cut(s)	121, 337
HinfI	GANTC	3 cut(s)	57, 69, 240
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	121, 337
Hpy188I	TCNGA	2 cut(s)	56, 359
Hpy8I	GTNNAC	2 cut(s)	121, 337
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	320, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 290
HpyF3I	CTNAG	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	349
KflI	GGGWCCC	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	8, 24
LpnPI	CCDG	6 cut(s)	8, 29, 35, 47, 74, 86
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	285, 383
MboII	GAAGA	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	2 cut(s)	84, 298
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	23, 62, 74
MvaI	CCWGG	2 cut(s)	23, 62
MwoI	GCNNNNNNNGC	2 cut(s)	137, 290
NciI	CCSGG	1 cut(s)	74
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	20, 38, 39
NspI	RCATGY	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	57, 69
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	80, 253
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	21, 60
PspGI	CCWGG	2 cut(s)	21, 60
PspN4I	GGNNCC	3 cut(s)	20, 38, 39
PspPI	GGNCC	3 cut(s)	37, 46, 101
PspPPI	RGGWCCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	142
SatI	GCNGC	2 cut(s)	79, 252
Sau96I	GGNCC	3 cut(s)	37, 46, 101
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	3 cut(s)	23, 62, 74
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	8 cut(s)	95, 103, 142, 154, 160, 256, 295, 326
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	2 cut(s)	37, 101
SmiMI	CAYNNNNRTG	1 cut(s)	350
SsiI	CCGC	2 cut(s)	41, 78
SspMI	CTAG	2 cut(s)	285, 383
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	21, 60, 72
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	203
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	57, 69
TseI	GCWGC	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	37, 101
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	2 cut(s)	285, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.