Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

17133680 .. 17142235

Gene Structure 8556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24130.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGACTGTTCTTATTTTGCTCCTCACAGAAATAACTCCAAAAAGTGTTGCTGTTCACAATCCCACAGAAGTTGCTAGGTTTGTGGTTAGGCCGGTGGCGTGGCTTTCGTTGGTTCTATATCCGGTGGGAAGAGTTGTTACATATCTATCAATGGGGATGCTGAAAATTCTAGGGTTGAAAGGAAGAAGTGAACCATATGTTACGGAAGAGGAGTTAAAACTGATGTTGCGAGGGGCAGAGTTAAGTGGGGCAATCGAGGAGGAAGAACAGGATATGATTGAGAATGTGTTGGAGATTAAAGATACGCATGTTAGAGAGGTGATGACACCTCTTGTAGATGTAGTAGCAATTGATGCCAGTGCAACGCTGATTGATTTTCATGACTTGTGGGTGACTCATCAATATTCAAGGGTGCCAGTTTTTGAGCAGCGTGTTGATAATATCGTAGGCATTGCTTATGCAATGGATCTCCTGGATTTTGTTCAGAAGGGTGAGCTACTAGAGAGTACTACTGTTGGGGATATGGCTCAAAAACCTGGTTACTTTGTGCCGGATTCAATGTCAGTCTGGAATCTTCTTAGAGAATTCCGCATCCGGAAGGTTCACATGGCTGTGGTTCTCAATGAATATGGTGGAACTGTAGGGATAATTACACTAGAAGATGTGGTGGAAGAAATTGTTGGTGAAATTTTTGATGAAAATGATTCCAAGGAGGAGATTCAGAAAAAAACTGGCTACATAGTAATGCGTGCAGAGGGAGTGTTTGATGTGGATGCTAACACATCTATTGACCAGCTCTCTGAAGATCTAAATGTGAAAATGCCTGAGGGTCATCAATATGAGACGGTATCCGGATTTATATGCGAAGCATTTGGTTATATACCAAGGACGGGTGAGAGCATCAAAGTAGTTCTTGAAAAGGAAATTGAAGAGGAGAATGATGAGTCCAAATCCGAGAAGCAGGAGAAAAAGGAAAAGCACCAAATTTTTAAACTTGAGATTCTGGCAGGAAATGCCAGAAAGGTTGGTGCTGTTCGATTTGAAAGGTTAGAAAATGATACTGCTACGTTGGAGACCAAAGAGGTTGCCCGCCTGGTTCCCAAAATTATGAAAAGAAAGTCTAGTAGTGGTCATGACTCAGATGGTGGAGAATCTGATGAAGATTCATTCCAGAAGAGACCACATCTTGAAATACCTGATGAGCATGAAGACACCGTTGATAATCTCAGTAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

413

Amino Acids

46.58

Weight (kDa)

4.75

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	165 - 338	2.9e-44	Cyclin M transmembrane N-terminal domain
CBS	PF00571	421 - 476	7e-07	CBS domain
CorC_HlyC	PF03471	499 - 599	1.5e-14	Transporter associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AccIII	TCCGGA	2 cut(s)	594, 851
AciI	CCGC	2 cut(s)	589, 1090
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	4 cut(s)	165, 584, 687, 984
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	1 cut(s)	890
AgsI	TTSAA	7 cut(s)	178, 408, 558, 917, 929, 1043, 1190
AjnI	CCWGG	3 cut(s)	471, 535, 1092
AjuI	GAANNNNNNNTTGG	2 cut(s)	663, 695
AluBI	AGCT	2 cut(s)	496, 796
AluI	AGCT	2 cut(s)	496, 796
Alw26I	GTCTC	3 cut(s)	836, 1067, 1171
AlwI	GGATC	1 cut(s)	474
Aor13HI	TCCGGA	2 cut(s)	594, 851
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	4 cut(s)	165, 584, 687, 984
AsuHPI	GGTGA	5 cut(s)	331, 403, 503, 695, 905
AxyI	CCTNAGG	1 cut(s)	825
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
BanI	GGYRCC	1 cut(s)	412
BarI	GAAGNNNNNNTAC	2 cut(s)	121, 153
BbsI	GAAGAC	1 cut(s)	1215
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	1136
BciT130I	CCWGG	3 cut(s)	473, 537, 1094
BciVI	GTATCC	1 cut(s)	859
BcoDI	GTCTC	3 cut(s)	836, 1067, 1171
BfaI	CTAG	5 cut(s)	75, 170, 500, 656, 1122
BfmI	CTRYAG	1 cut(s)	639
BfuI	GTATCC	1 cut(s)	859
BglII	AGATCT	1 cut(s)	805
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	473, 537, 1094
BmiI	GGNNCC	2 cut(s)	414, 1098
BmrFI	CCNGG	3 cut(s)	473, 537, 1094
BmsI	GCATC	5 cut(s)	147, 343, 600, 763, 909
BpiI	GAAGAC	1 cut(s)	1215
BpuEI	CTTGAG	1 cut(s)	1016
BsaI	GGTCTC	2 cut(s)	1067, 1171
BsaJI	CCNNGG	2 cut(s)	708, 884
BsaWI	WCCGGW	3 cut(s)	121, 594, 851
Bsc4I	CCNNNNNNNGG	1 cut(s)	890
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	3 cut(s)	357, 416, 736
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	2 cut(s)	450, 468
BseAI	TCCGGA	2 cut(s)	594, 851
BseBI	CCWGG	3 cut(s)	473, 537, 1094
BseDI	CCNNGG	2 cut(s)	708, 884
BseGI	GGATG	3 cut(s)	162, 591, 778
BseLI	CCNNNNNNNGG	1 cut(s)	890
BseMI	GCAATG	2 cut(s)	450, 468
BseMII	CTCAG	2 cut(s)	816, 1152
BseNI	ACTGG	3 cut(s)	357, 416, 736
BseRI	GAGGAG	5 cut(s)	11, 224, 272, 728, 947
BseXI	GCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	412
BsiSI	CCGG	5 cut(s)	92, 122, 551, 595, 852
BslI	CCNNNNNNNGG	1 cut(s)	890
BsmAI	GTCTC	3 cut(s)	836, 1067, 1171
BsmBI	CGTCTC	1 cut(s)	836
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	2 cut(s)	1067, 1171
Bsp13I	TCCGGA	2 cut(s)	594, 851
Bsp143I	GATC	2 cut(s)	466, 805
BspACI	CCGC	2 cut(s)	589, 1090
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	3 cut(s)	817, 1151, 1239
BspEI	TCCGGA	2 cut(s)	594, 851
BspHI	TCATGA	2 cut(s)	379, 1132
BspLI	GGNNCC	2 cut(s)	414, 1098
BspPI	GGATC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	412
BspTNI	GGTCTC	2 cut(s)	1067, 1171
BsrDI	GCAATG	2 cut(s)	450, 468
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	3 cut(s)	357, 416, 736
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	708, 884
BssMI	GATC	2 cut(s)	466, 805
BssT1I	CCWWGG	2 cut(s)	708, 884
Bst2UI	CCWGG	3 cut(s)	473, 537, 1094
Bst4CI	ACNGT	5 cut(s)	7, 514, 640, 847, 1216
Bst6I	CTCTTC	4 cut(s)	124, 201, 924, 1169
BstAPI	GCANNNNNTGC	2 cut(s)	353, 1013
BstC8I	GCNNGC	2 cut(s)	750, 1090
BstDEI	CTNAG	4 cut(s)	578, 825, 1138, 1226
BstF5I	GGATG	3 cut(s)	162, 591, 778
BstKTI	GATC	2 cut(s)	469, 808
BstMAI	GTCTC	3 cut(s)	836, 1067, 1171
BstMBI	GATC	2 cut(s)	466, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 1013
BstNI	CCWGG	3 cut(s)	473, 537, 1094
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	3 cut(s)	471, 535, 1092
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	1215
BstX2I	RGATCY	2 cut(s)	466, 805
BstYI	RGATCY	2 cut(s)	466, 805
Bsu36I	CCTNAGG	1 cut(s)	825
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	3 cut(s)	162, 591, 778
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	750, 1090
CciI	TCATGA	2 cut(s)	379, 1132
Cfr10I	RCCGGY	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	507
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	5 cut(s)	308, 380, 607, 1133, 1205
CviJI	RGCY	7 cut(s)	91, 103, 496, 527, 611, 735, 796
CviKI_1	RGCY	7 cut(s)	91, 103, 496, 527, 611, 735, 796
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	4 cut(s)	578, 825, 1138, 1226
DpnI	GATC	2 cut(s)	468, 807
DpnII	GATC	2 cut(s)	466, 805
DraI	TTTAAA	1 cut(s)	991
Eam1104I	CTCTTC	4 cut(s)	124, 201, 924, 1169
EarI	CTCTTC	4 cut(s)	124, 201, 924, 1169
Eco130I	CCWWGG	2 cut(s)	708, 884
Eco31I	GGTCTC	2 cut(s)	1067, 1171
Eco57I	CTGAAG	1 cut(s)	822
Eco81I	CCTNAGG	1 cut(s)	825
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	471, 535, 1092
EcoT14I	CCWWGG	2 cut(s)	708, 884
ErhI	CCWWGG	2 cut(s)	708, 884
Esp3I	CGTCTC	1 cut(s)	836
FaeI	CATG	5 cut(s)	311, 383, 610, 1136, 1208
FalI	AAGNNNNNCTT	2 cut(s)	897, 929
FatI	CATG	5 cut(s)	307, 379, 606, 1132, 1204
FauI	CCCGC	1 cut(s)	1097
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	3 cut(s)	169, 578, 785
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	5 cut(s)	75, 170, 500, 656, 1122
GluI	GCNGC	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	5 cut(s)	92, 122, 551, 595, 852
Hin1II	CATG	5 cut(s)	311, 383, 610, 1136, 1208
HpaII	CCGG	5 cut(s)	92, 122, 551, 595, 852
HphI	GGTGA	5 cut(s)	331, 403, 503, 695, 905
Hpy166II	GTNNAC	3 cut(s)	55, 191, 604
Hpy188I	TCNGA	6 cut(s)	486, 723, 802, 955, 1141, 1156
Hpy188III	TCNNGA	8 cut(s)	380, 568, 595, 852, 914, 1133, 1171, 1187
Hpy8I	GTNNAC	3 cut(s)	55, 191, 604
HpyAV	CCTTC	2 cut(s)	481, 592
HpyCH4III	ACNGT	5 cut(s)	7, 514, 640, 847, 1216
HpyCH4IV	ACGT	1 cut(s)	1067
HpyCH4V	TGCA	3 cut(s)	362, 461, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 1013
HpyF3I	CTNAG	4 cut(s)	578, 825, 1138, 1226
HpySE526I	ACGT	1 cut(s)	1067
Hsp92II	CATG	5 cut(s)	311, 383, 610, 1136, 1208
Kpn2I	TCCGGA	2 cut(s)	594, 851
Kzo9I	GATC	2 cut(s)	466, 805
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	5 cut(s)	147, 343, 600, 763, 909
MabI	ACCWGGT	1 cut(s)	535
MaeI	CTAG	5 cut(s)	75, 170, 500, 656, 1122
MaeII	ACGT	1 cut(s)	1067
MaeIII	GTNAC	4 cut(s)	136, 199, 391, 539
MalI	GATC	2 cut(s)	468, 807
MboI	GATC	2 cut(s)	466, 805
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	2 cut(s)	466, 805
MluCI	AATT	9 cut(s)	165, 348, 584, 648, 675, 687, 924, 984, 1104
MlyI	GAGTC	3 cut(s)	388, 953, 1130
MmeI	TCCRAC	2 cut(s)	270, 1050
MroI	TCCGGA	2 cut(s)	594, 851
MseI	TTAA	4 cut(s)	215, 242, 297, 990
MslI	CAYNNNNRTG	3 cut(s)	611, 743, 837
MspI	CCGG	5 cut(s)	92, 122, 551, 595, 852
MspR9I	CCNGG	3 cut(s)	473, 537, 1094
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	3 cut(s)	473, 537, 1094
MwoI	GCNNNNNNNGC	2 cut(s)	353, 1013
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	466, 805
NlaIII	CATG	5 cut(s)	311, 383, 610, 1136, 1208
NlaIV	GGNNCC	2 cut(s)	414, 1098
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	311
PagI	TCATGA	2 cut(s)	379, 1132
PfeI	GAWTC	7 cut(s)	554, 571, 704, 718, 1000, 1151, 1163
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	1 cut(s)	429
PleI	GAGTC	3 cut(s)	388, 952, 1130
PpsI	GAGTC	3 cut(s)	388, 952, 1130
Psp6I	CCWGG	3 cut(s)	471, 535, 1092
PspGI	CCWGG	3 cut(s)	471, 535, 1092
PspN4I	GGNNCC	2 cut(s)	414, 1098
PsuI	RGATCY	2 cut(s)	466, 805
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	3 cut(s)	611, 743, 837
SaqAI	TTAA	4 cut(s)	215, 242, 297, 990
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	2 cut(s)	466, 805
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	3 cut(s)	388, 953, 1130
ScrFI	CCNGG	3 cut(s)	473, 537, 1094
SexAI	ACCWGGT	1 cut(s)	535
SfaNI	GCATC	5 cut(s)	147, 343, 600, 763, 909
SfcI	CTRYAG	1 cut(s)	639
SmiMI	CAYNNNNRTG	3 cut(s)	611, 743, 837
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
Sse9I	AATT	9 cut(s)	165, 348, 584, 648, 675, 687, 924, 984, 1104
SsiI	CCGC	2 cut(s)	589, 1090
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	5 cut(s)	75, 170, 500, 656, 1122
StyD4I	CCNGG	3 cut(s)	471, 535, 1092
StyI	CCWWGG	2 cut(s)	708, 884
TaaI	ACNGT	5 cut(s)	7, 514, 640, 847, 1216
TaiI	ACGT	1 cut(s)	1070
TaqI	TCGA	2 cut(s)	255, 1036
TasI	AATT	9 cut(s)	165, 348, 584, 648, 675, 687, 924, 984, 1104
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	7 cut(s)	554, 571, 704, 718, 1000, 1151, 1163
Tru1I	TTAA	4 cut(s)	215, 242, 297, 990
Tru9I	TTAA	4 cut(s)	215, 242, 297, 990
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	7 cut(s)	368, 639, 711, 1124, 1155, 1173, 1221
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	4 cut(s)	165, 584, 687, 984
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	5 cut(s)	75, 170, 500, 656, 1122
ZrmI	AGTACT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.